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The map label for this gene is prt1 [H]

Identifier: 46447599

GI number: 46447599

Start: 2340693

End: 2341673

Strand: Reverse

Name: prt1 [H]

Synonym: pc1965

Alternate gene names: 46447599

Gene position: 2341673-2340693 (Counterclockwise)

Preceding gene: 46447600

Following gene: 46447598

Centisome position: 96.99

GC content: 36.49

Gene sequence:

>981_bases
ATGGAGCCTTCAAGATTTTTCTCAAGACAAGATTATTATTCTTTTAGTCAAACTTATGCTCAATTGAATCCTGCAACTAA
GCAAATAGAATCTGACTATGCGATAGAATGGAGTTATCCTGATCCAGATATTAAAATTTTCTCTGTAATCAATGGCCAGA
AAATTTGTACAAATAATCAATGTGAAGCTTCATCAAATCCTATCGCCGCAGAGCTTTACAAAACTGTAGTTGAAGTTTAC
GCGTTTTTTGAGAGAGTTTTTAAGTTAAGGGGAATTGATGATCAGGGAACTGTTACTAATCTTCACATTAATTGGCAAGA
ACGAAATGCAGAATGGAGTTGCTCTAGCTTAAACATCAATGAAGTATGTTGGTTTACTTTTAACGATGCCTATGCAGTAA
CTAAAGAGATTGTTGCTCATGCATACTTTCATGCAATTTTGCACAATAAGCTTAATTATCGGGGAGAATCGGGCGCATTG
GAGGAATCGTTGGCGGATGTCTTTGGAATCGCTTTTAAACACTGGCTGATTGACGAACAAATTTTAGAGGGCCCTAAAAA
TTGGTGGGTGGGGAGCTTTCGCAATTTGTCTATTCCATCGTCTATGCAGCAATACCAAGAAGATCTTAATAAACAAGGTT
TACCTATATATAAAGAAGAAAATGATTATGGCTATGTGCATAGGAATAGTTGCATTCCAAACCATGCTTTTTATTTAGCG
TGTCAATCAGAAGGTGGTAAAACGTGGGGAATCATTGCTCAAATCTGGTTCAAAGCTTCTCAAGATAGAACACTAGAAAG
CAATGAAACTTTTGAAACATTTGCTAATAGAACGATAGAAAAAGCTACAGAATTTGGAATGGATCGTATAGTTTTTCAAG
CCTGGTTAGATGTAGGTGTTTTATCTACTGCCTCTGAAAACAATGAATATGACGAAGAAATTGAAGGAAATCAATCTCAG
TCTCCCGAACACAGGCGATAG

Upstream 100 bases:

>100_bases
TAATAATTGATGTTAATAACATAAAAAGAATAAGACATAATATTTAATTAAAAAATTAATTTACAAAATTTGTTTATAAA
TATAATAGAGAGTAACAAAT

Downstream 100 bases:

>100_bases
GCGTGTTGGCTCTTAAAAAAACATTGGGCTTTAATTTTCTTGTCTTAAGAAAAGAAAAATTAAAGCCCAAAACTGCTAAT
ATTCAGACAATAAAAATCTT

Product: putative metalloproteinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MEPSRFFSRQDYYSFSQTYAQLNPATKQIESDYAIEWSYPDPDIKIFSVINGQKICTNNQCEASSNPIAAELYKTVVEVY
AFFERVFKLRGIDDQGTVTNLHINWQERNAEWSCSSLNINEVCWFTFNDAYAVTKEIVAHAYFHAILHNKLNYRGESGAL
EESLADVFGIAFKHWLIDEQILEGPKNWWVGSFRNLSIPSSMQQYQEDLNKQGLPIYKEENDYGYVHRNSCIPNHAFYLA
CQSEGGKTWGIIAQIWFKASQDRTLESNETFETFANRTIEKATEFGMDRIVFQAWLDVGVLSTASENNEYDEEIEGNQSQ
SPEHRR

Sequences:

>Translated_326_residues
MEPSRFFSRQDYYSFSQTYAQLNPATKQIESDYAIEWSYPDPDIKIFSVINGQKICTNNQCEASSNPIAAELYKTVVEVY
AFFERVFKLRGIDDQGTVTNLHINWQERNAEWSCSSLNINEVCWFTFNDAYAVTKEIVAHAYFHAILHNKLNYRGESGAL
EESLADVFGIAFKHWLIDEQILEGPKNWWVGSFRNLSIPSSMQQYQEDLNKQGLPIYKEENDYGYVHRNSCIPNHAFYLA
CQSEGGKTWGIIAQIWFKASQDRTLESNETFETFANRTIEKATEFGMDRIVFQAWLDVGVLSTASENNEYDEEIEGNQSQ
SPEHRR
>Mature_326_residues
MEPSRFFSRQDYYSFSQTYAQLNPATKQIESDYAIEWSYPDPDIKIFSVINGQKICTNNQCEASSNPIAAELYKTVVEVY
AFFERVFKLRGIDDQGTVTNLHINWQERNAEWSCSSLNINEVCWFTFNDAYAVTKEIVAHAYFHAILHNKLNYRGESGAL
EESLADVFGIAFKHWLIDEQILEGPKNWWVGSFRNLSIPSSMQQYQEDLNKQGLPIYKEENDYGYVHRNSCIPNHAFYLA
CQSEGGKTWGIIAQIWFKASQDRTLESNETFETFANRTIEKATEFGMDRIVFQAWLDVGVLSTASENNEYDEEIEGNQSQ
SPEHRR

Specific function: Unknown

COG id: COG3227

COG function: function code E; Zinc metalloprotease (elastase)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013856
- InterPro:   IPR001570 [H]

Pfam domain/function: PF01447 Peptidase_M4; PF02868 Peptidase_M4_C [H]

EC number: NA

Molecular weight: Translated: 37734; Mature: 37734

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPSRFFSRQDYYSFSQTYAQLNPATKQIESDYAIEWSYPDPDIKIFSVINGQKICTNNQ
CCCHHHCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCCEEEEEEECCCEEECCCC
CEASSNPIAAELYKTVVEVYAFFERVFKLRGIDDQGTVTNLHINWQERNAEWSCSSLNIN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
EVCWFTFNDAYAVTKEIVAHAYFHAILHNKLNYRGESGALEESLADVFGIAFKHWLIDEQ
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ILEGPKNWWVGSFRNLSIPSSMQQYQEDLNKQGLPIYKEENDYGYVHRNSCIPNHAFYLA
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCCCCEEEEE
CQSEGGKTWGIIAQIWFKASQDRTLESNETFETFANRTIEKATEFGMDRIVFQAWLDVGV
EECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSTASENNEYDEEIEGNQSQSPEHRR
HCCCCCCCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MEPSRFFSRQDYYSFSQTYAQLNPATKQIESDYAIEWSYPDPDIKIFSVINGQKICTNNQ
CCCHHHCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCCEEEEEEECCCEEECCCC
CEASSNPIAAELYKTVVEVYAFFERVFKLRGIDDQGTVTNLHINWQERNAEWSCSSLNIN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
EVCWFTFNDAYAVTKEIVAHAYFHAILHNKLNYRGESGALEESLADVFGIAFKHWLIDEQ
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ILEGPKNWWVGSFRNLSIPSSMQQYQEDLNKQGLPIYKEENDYGYVHRNSCIPNHAFYLA
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCCCCEEEEE
CQSEGGKTWGIIAQIWFKASQDRTLESNETFETFANRTIEKATEFGMDRIVFQAWLDVGV
EECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSTASENNEYDEEIEGNQSQSPEHRR
HCCCCCCCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1917878 [H]