| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is ybbP [H]
Identifier: 46447267
GI number: 46447267
Start: 1951626
End: 1952963
Strand: Direct
Name: ybbP [H]
Synonym: pc1633
Alternate gene names: 46447267
Gene position: 1951626-1952963 (Clockwise)
Preceding gene: 46447266
Following gene: 46447268
Centisome position: 80.83
GC content: 34.45
Gene sequence:
>1338_bases TTGATCATAGCTTTGTTCGTCTACTATCTTTTGTCTTTTTTTTGGAATACGCGTGCTATGGATGTGCTTTATGGGAGTTT AGCTTTTTTAGCTTTCTTTGCTCTTTCTAAATGGCTAAATTTGCCTGTCTTAGAAAAACTAATGTTTTATGTCGTCAACG TCGCTGTATTAGCTTTATTAATTATCTTTCAGCCAGAAATTCGACTTTCTTTATCTAAACTCAGTTTAAAAACTAAAAAA TATCGCGAAGTGACAGAGTTCGATAAATTTCTTGAAAGCATCTCTCAATCTATCTACCGCTTATCAGAAAGGCGTATAGG AGCCCTTGTCGTTCTTGAAAATCAAGATTCTTTAGAAGACTTAGCCATCAAAGCAGTATTAATTAATGCGCAATTCTCCC CTGAGTTATTAGAATCTATTTTTATTACCACAACACCTTTGCATGATGGAGCTGTCCTTGTTCGAGGAACGACGATTTTA TCTGCAGCAACTATTCTAATTACCATCCATCGACCAATTGGTGAAGTTCCAAAAGGATACGAGTTTTTAGATAGTTGGCC TATCGTTTTAATGCAAACTGTCAGCGGTCCTCAAGATCAAGTCCTTAATCTGAAAAATCAAGGGCTTGAGCTTACTTTTG ATTTCAATGAAATTTCAAAAGAGCAATTAGATGCTTTACAATCGACAAGTCCATACGACGATGAAATTAACTTTTACATT CCAGATGCTTGGAAAAAAGTATCTATTCCTTTTTTAGCAAGAGGCCCTGTTGCTTTAAATGACCCTGAATCAAAATTTCT TCATTTAAGCTTTTTGAAACAGCAGTTAATTCCTTTGAAAAATGACCTTCCCTTACACGTATATTATCCTCTTAAGTATA GCGATGAAATCAATCCTAATACTTATGCTTTAGCAATTAATGATTATGTTCATATGAAGAACCATATTCCTATTTTAAAG CTCCCCTTACTCGCCAGTAATGTCAGTAAACTTTTTGTTGAAATTGTCAAAGATAATTTAGAAATTGAAATTGTAACAGC CCCAAAAACAGAGCGTCGTAAACTCGAATGGGGAATTGGCTTTATTGATGACTCTCACTTAGAGGATACTTACGCAGCTT TTTTACTTAGCAATACCAAATCAAATAATGGGTATTCTCAATCGAAAGTTCAAGAAAGGGAAAAATATTTCAGGCAAAGA TTCCGCAATTACATGCAACGTTTAACTCTTTATTTAAATTCGAATCAAAAATTGGAATTAGAAAGCTCTTTGAAAGATCA AGAAATTCGAATTAAGATTCCGGCCTTATCTCAAGGAGTTCCAACTAATGCCAGCTGA
Upstream 100 bases:
>100_bases AAGACATTTTAAAAGTGATGCAACAATTTTTTTCAACCTAAAGCAAGTTTTGGCATAGTGTATGTGGATTTTTCAGCTGT TCATTCCAGGAATAGAGATA
Downstream 100 bases:
>100_bases GCGTTTTTTTACCTCTGAGGAAATATCTTTGCATCAACATGTGCTATTAAAAGATAATGAATTTCACCATCTTGCGCACG TGATGAGGGCAAAAAAAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 445
Protein sequence:
>445_residues MIIALFVYYLLSFFWNTRAMDVLYGSLAFLAFFALSKWLNLPVLEKLMFYVVNVAVLALLIIFQPEIRLSLSKLSLKTKK YREVTEFDKFLESISQSIYRLSERRIGALVVLENQDSLEDLAIKAVLINAQFSPELLESIFITTTPLHDGAVLVRGTTIL SAATILITIHRPIGEVPKGYEFLDSWPIVLMQTVSGPQDQVLNLKNQGLELTFDFNEISKEQLDALQSTSPYDDEINFYI PDAWKKVSIPFLARGPVALNDPESKFLHLSFLKQQLIPLKNDLPLHVYYPLKYSDEINPNTYALAINDYVHMKNHIPILK LPLLASNVSKLFVEIVKDNLEIEIVTAPKTERRKLEWGIGFIDDSHLEDTYAAFLLSNTKSNNGYSQSKVQEREKYFRQR FRNYMQRLTLYLNSNQKLELESSLKDQEIRIKIPALSQGVPTNAS
Sequences:
>Translated_445_residues MIIALFVYYLLSFFWNTRAMDVLYGSLAFLAFFALSKWLNLPVLEKLMFYVVNVAVLALLIIFQPEIRLSLSKLSLKTKK YREVTEFDKFLESISQSIYRLSERRIGALVVLENQDSLEDLAIKAVLINAQFSPELLESIFITTTPLHDGAVLVRGTTIL SAATILITIHRPIGEVPKGYEFLDSWPIVLMQTVSGPQDQVLNLKNQGLELTFDFNEISKEQLDALQSTSPYDDEINFYI PDAWKKVSIPFLARGPVALNDPESKFLHLSFLKQQLIPLKNDLPLHVYYPLKYSDEINPNTYALAINDYVHMKNHIPILK LPLLASNVSKLFVEIVKDNLEIEIVTAPKTERRKLEWGIGFIDDSHLEDTYAAFLLSNTKSNNGYSQSKVQEREKYFRQR FRNYMQRLTLYLNSNQKLELESSLKDQEIRIKIPALSQGVPTNAS >Mature_445_residues MIIALFVYYLLSFFWNTRAMDVLYGSLAFLAFFALSKWLNLPVLEKLMFYVVNVAVLALLIIFQPEIRLSLSKLSLKTKK YREVTEFDKFLESISQSIYRLSERRIGALVVLENQDSLEDLAIKAVLINAQFSPELLESIFITTTPLHDGAVLVRGTTIL SAATILITIHRPIGEVPKGYEFLDSWPIVLMQTVSGPQDQVLNLKNQGLELTFDFNEISKEQLDALQSTSPYDDEINFYI PDAWKKVSIPFLARGPVALNDPESKFLHLSFLKQQLIPLKNDLPLHVYYPLKYSDEINPNTYALAINDYVHMKNHIPILK LPLLASNVSKLFVEIVKDNLEIEIVTAPKTERRKLEWGIGFIDDSHLEDTYAAFLLSNTKSNNGYSQSKVQEREKYFRQR FRNYMQRLTLYLNSNQKLELESSLKDQEIRIKIPALSQGVPTNAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014046 - InterPro: IPR003390 [H]
Pfam domain/function: PF02457 DisA_N [H]
EC number: NA
Molecular weight: Translated: 51051; Mature: 51051
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIALFVYYLLSFFWNTRAMDVLYGSLAFLAFFALSKWLNLPVLEKLMFYVVNVAVLALL CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IIFQPEIRLSLSKLSLKTKKYREVTEFDKFLESISQSIYRLSERRIGALVVLENQDSLED HHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHH LAIKAVLINAQFSPELLESIFITTTPLHDGAVLVRGTTILSAATILITIHRPIGEVPKGY HEEEEEEEECCCCHHHHHHHHEEECCCCCCEEEEECHHHHHEEEEEEEEECCCCCCCCCC EFLDSWPIVLMQTVSGPQDQVLNLKNQGLELTFDFNEISKEQLDALQSTSPYDDEINFYI HHHCCCCEEEEECCCCCHHHHHHHCCCCEEEEEEHHHHCHHHHHHHHCCCCCCCCCEEEE PDAWKKVSIPFLARGPVALNDPESKFLHLSFLKQQLIPLKNDLPLHVYYPLKYSDEINPN CCCCCEECCCEEECCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC TYALAINDYVHMKNHIPILKLPLLASNVSKLFVEIVKDNLEIEIVTAPKTERRKLEWGIG EEEEEEECEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCC FIDDSHLEDTYAAFLLSNTKSNNGYSQSKVQEREKYFRQRFRNYMQRLTLYLNSNQKLEL CCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEE ESSLKDQEIRIKIPALSQGVPTNAS CCCCCCCEEEEEECCCCCCCCCCCC >Mature Secondary Structure MIIALFVYYLLSFFWNTRAMDVLYGSLAFLAFFALSKWLNLPVLEKLMFYVVNVAVLALL CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IIFQPEIRLSLSKLSLKTKKYREVTEFDKFLESISQSIYRLSERRIGALVVLENQDSLED HHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHH LAIKAVLINAQFSPELLESIFITTTPLHDGAVLVRGTTILSAATILITIHRPIGEVPKGY HEEEEEEEECCCCHHHHHHHHEEECCCCCCEEEEECHHHHHEEEEEEEEECCCCCCCCCC EFLDSWPIVLMQTVSGPQDQVLNLKNQGLELTFDFNEISKEQLDALQSTSPYDDEINFYI HHHCCCCEEEEECCCCCHHHHHHHCCCCEEEEEEHHHHCHHHHHHHHCCCCCCCCCEEEE PDAWKKVSIPFLARGPVALNDPESKFLHLSFLKQQLIPLKNDLPLHVYYPLKYSDEINPN CCCCCEECCCEEECCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC TYALAINDYVHMKNHIPILKLPLLASNVSKLFVEIVKDNLEIEIVTAPKTERRKLEWGIG EEEEEEECEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCC FIDDSHLEDTYAAFLLSNTKSNNGYSQSKVQEREKYFRQRFRNYMQRLTLYLNSNQKLEL CCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEE ESSLKDQEIRIKIPALSQGVPTNAS CCCCCCCEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9274029; 9384377 [H]