| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447236
Identifier: 46447236
GI number: 46447236
Start: 1918217
End: 1920091
Strand: Direct
Name: 46447236
Synonym: pc1602
Alternate gene names: NA
Gene position: 1918217-1920091 (Clockwise)
Preceding gene: 46447234
Following gene: 46447239
Centisome position: 79.45
GC content: 34.93
Gene sequence:
>1875_bases TTGTCTTTTTCCTGCTTTAACAAACTAGGAAAGAGTCGATTCTCATACTTGTTAAAAAATTATTTTTTGGACGTTTTAAA AACAAAAAAGTTAATAAGATTTCCGTCTCCAATAATCAAACAAGGAGTTTTTTTTATGCATATAGTAGATTTAAGATCAT CATCAACTACTCACGATGGAACAAATCTACAAGGAGAACAATCGAGTCAAAATCTAGCAATCCCACCCCATCCCCCTATT CCTCCATTCATTTCTCCCTTACCTTTACCAGAAGCTTCTCCTCGCGCAAATGGCATTTTATGTACTCAAATTTCTCCTAC GCCAATGACTCAAAATTCAGGGACTCCCCCTCAAAATAGATTTAGAGAGACTCATTCAGATAGCACAAGTAATTTTTCTG CGATTCCCACAAGCGAAGCAGAGCAATCTGTTGAAGCAGATCCAATTTCTGCTCCTACTTCTCCTTTAATTTTAGCTCAT GTTTCTCATCAAGATGAAGGTCCTTTAGTCCAAACATTAGCAACTAAAATTATGGCGTTTATTGAAAGGCAAACTCCTAT TCGTTTAAATACTTGGTTTACTCCTGAGGATCAAGCAGAAATGGAACAAATTATTAGAAATACCTCTGACAGAAGCCAAA CTATTACAATGTCATTTTTGACATGTCTATCTGGAATGGTAGCCAGTTTTGCTCTCGCTGTTTCCCAAAAAAACAAGTCT TATGAATTAGATGCGAGCAGATTAACGATCTTACAAAGAGAGGCCTACAGCCAAATAAAGGAGCAAGATCAAGCCTCTTA CGAAGTTTTAACTGAACAATCTCTTAGAATAGAAGAATTAATGCAAACAAGAAAAGATGTTTATAGAATTCAGTATGAAA AGATGCAAACAGAGCAAATGCATTTAAAAGAAATACACAAAGGCAACACTAGAGGGTGGTTTGCCCCTCATTTTGGGATT GCTTACCACGCAGAAACAGTGTTTAAATTACTAGAACAACGACGTCTTAATTTAAAAATTTCTCTTAATGATTTAAACAG ACTTCCAGAAAATTCTCCACCTCGCACTTCACATGAAGTAACGCAAATTGTAACTACAATAAACACTAAACTTGCAGAAT TAGAAGAGCAAATTTTAGTTCATCAAAAAACATTAAAATCTTTAGAGGGTGAATCTGCAGACCAATTTAGATGTGAAAGT TATTACCTGCATTTTAACAGAATGAAAAAACAAAGTAGATGCTACGATGAAAATCAAAGAAGAATAGCACAGCGTCTTCG TGAACTAGAAGCAGAAACAAACACTGAACTTTTGCCAAGTCAGATGGCTCAACGAAAATTTGAGATTGCTATGATCAGGG CTTATCAGAAAAAAATTGAGAAAAGATTAATTAATCTCAGAACGCTTTTAAGCGGCTATAAAATTATGGAGGGAGAAAGA GTGACTGTTAACGTAAGAAGAAATAACTCTAGATCAGCTGAATTAAAAAAAGGAGCTGATCTTTTAAACAGTCTTGTTGC TCTTCAAGAACGAGTGACTATACACTCTTCATTAGCGCACATTTCCCCCCCCGAAATAGAAAAAAATTTGCTTAAACAAG ATTACTTGAAATTTCTTGAGTTACAATCTAGTTTTAGTGTGGTGCATAATACTTTCAAAGAGAGAACAGTTAGTTTGGAA AGCAACATGATTAAGTGTTTTTCAAATGTTGAAAAAATTGAAAGTTGTTTAAAAACGTTTAGACAGCAAATGGCTAATCT TACAGTTGAAATTAAACACAGAACGTGTTGGTTCAAAGCAGAGATTACACCTCCTGCTCAACCCTGGTGGCGTTTTATTA TCAATTTCTTATTCCTTCAAAGGCGCTTTGATTAA
Upstream 100 bases:
>100_bases GATATCTGCTCACCCCCCTAACGACCTTTTGCTCTTATATTTACACAAGCTAGAGCTTCTTAATTAGCTAATACTGGATA TAAAACTGACAAATGATCGC
Downstream 100 bases:
>100_bases TCTTGTTTGATACCGGTACTGAAAAAACTTTAAAGTTTTTTCAGTACCGAAATTGCTAATACTAAATTTATGACATTCAA AATCTTAAAAAAGTTAATGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 624; Mature: 623
Protein sequence:
>624_residues MSFSCFNKLGKSRFSYLLKNYFLDVLKTKKLIRFPSPIIKQGVFFMHIVDLRSSSTTHDGTNLQGEQSSQNLAIPPHPPI PPFISPLPLPEASPRANGILCTQISPTPMTQNSGTPPQNRFRETHSDSTSNFSAIPTSEAEQSVEADPISAPTSPLILAH VSHQDEGPLVQTLATKIMAFIERQTPIRLNTWFTPEDQAEMEQIIRNTSDRSQTITMSFLTCLSGMVASFALAVSQKNKS YELDASRLTILQREAYSQIKEQDQASYEVLTEQSLRIEELMQTRKDVYRIQYEKMQTEQMHLKEIHKGNTRGWFAPHFGI AYHAETVFKLLEQRRLNLKISLNDLNRLPENSPPRTSHEVTQIVTTINTKLAELEEQILVHQKTLKSLEGESADQFRCES YYLHFNRMKKQSRCYDENQRRIAQRLRELEAETNTELLPSQMAQRKFEIAMIRAYQKKIEKRLINLRTLLSGYKIMEGER VTVNVRRNNSRSAELKKGADLLNSLVALQERVTIHSSLAHISPPEIEKNLLKQDYLKFLELQSSFSVVHNTFKERTVSLE SNMIKCFSNVEKIESCLKTFRQQMANLTVEIKHRTCWFKAEITPPAQPWWRFIINFLFLQRRFD
Sequences:
>Translated_624_residues MSFSCFNKLGKSRFSYLLKNYFLDVLKTKKLIRFPSPIIKQGVFFMHIVDLRSSSTTHDGTNLQGEQSSQNLAIPPHPPI PPFISPLPLPEASPRANGILCTQISPTPMTQNSGTPPQNRFRETHSDSTSNFSAIPTSEAEQSVEADPISAPTSPLILAH VSHQDEGPLVQTLATKIMAFIERQTPIRLNTWFTPEDQAEMEQIIRNTSDRSQTITMSFLTCLSGMVASFALAVSQKNKS YELDASRLTILQREAYSQIKEQDQASYEVLTEQSLRIEELMQTRKDVYRIQYEKMQTEQMHLKEIHKGNTRGWFAPHFGI AYHAETVFKLLEQRRLNLKISLNDLNRLPENSPPRTSHEVTQIVTTINTKLAELEEQILVHQKTLKSLEGESADQFRCES YYLHFNRMKKQSRCYDENQRRIAQRLRELEAETNTELLPSQMAQRKFEIAMIRAYQKKIEKRLINLRTLLSGYKIMEGER VTVNVRRNNSRSAELKKGADLLNSLVALQERVTIHSSLAHISPPEIEKNLLKQDYLKFLELQSSFSVVHNTFKERTVSLE SNMIKCFSNVEKIESCLKTFRQQMANLTVEIKHRTCWFKAEITPPAQPWWRFIINFLFLQRRFD >Mature_623_residues SFSCFNKLGKSRFSYLLKNYFLDVLKTKKLIRFPSPIIKQGVFFMHIVDLRSSSTTHDGTNLQGEQSSQNLAIPPHPPIP PFISPLPLPEASPRANGILCTQISPTPMTQNSGTPPQNRFRETHSDSTSNFSAIPTSEAEQSVEADPISAPTSPLILAHV SHQDEGPLVQTLATKIMAFIERQTPIRLNTWFTPEDQAEMEQIIRNTSDRSQTITMSFLTCLSGMVASFALAVSQKNKSY ELDASRLTILQREAYSQIKEQDQASYEVLTEQSLRIEELMQTRKDVYRIQYEKMQTEQMHLKEIHKGNTRGWFAPHFGIA YHAETVFKLLEQRRLNLKISLNDLNRLPENSPPRTSHEVTQIVTTINTKLAELEEQILVHQKTLKSLEGESADQFRCESY YLHFNRMKKQSRCYDENQRRIAQRLRELEAETNTELLPSQMAQRKFEIAMIRAYQKKIEKRLINLRTLLSGYKIMEGERV TVNVRRNNSRSAELKKGADLLNSLVALQERVTIHSSLAHISPPEIEKNLLKQDYLKFLELQSSFSVVHNTFKERTVSLES NMIKCFSNVEKIESCLKTFRQQMANLTVEIKHRTCWFKAEITPPAQPWWRFIINFLFLQRRFD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72086; Mature: 71954
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSCFNKLGKSRFSYLLKNYFLDVLKTKKLIRFPSPIIKQGVFFMHIVDLRSSSTTHDG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCCCCCCC TNLQGEQSSQNLAIPPHPPIPPFISPLPLPEASPRANGILCTQISPTPMTQNSGTPPQNR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHH FRETHSDSTSNFSAIPTSEAEQSVEADPISAPTSPLILAHVSHQDEGPLVQTLATKIMAF HHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH IERQTPIRLNTWFTPEDQAEMEQIIRNTSDRSQTITMSFLTCLSGMVASFALAVSQKNKS HHCCCCEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YELDASRLTILQREAYSQIKEQDQASYEVLTEQSLRIEELMQTRKDVYRIQYEKMQTEQM EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH HLKEIHKGNTRGWFAPHFGIAYHAETVFKLLEQRRLNLKISLNDLNRLPENSPPRTSHEV HHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCHHHH TQIVTTINTKLAELEEQILVHQKTLKSLEGESADQFRCESYYLHFNRMKKQSRCYDENQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH RIAQRLRELEAETNTELLPSQMAQRKFEIAMIRAYQKKIEKRLINLRTLLSGYKIMEGER HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCE VTVNVRRNNSRSAELKKGADLLNSLVALQERVTIHSSLAHISPPEIEKNLLKQDYLKFLE EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LQSSFSVVHNTFKERTVSLESNMIKCFSNVEKIESCLKTFRQQMANLTVEIKHRTCWFKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECEEEEEE EITPPAQPWWRFIINFLFLQRRFD ECCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SFSCFNKLGKSRFSYLLKNYFLDVLKTKKLIRFPSPIIKQGVFFMHIVDLRSSSTTHDG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCCCCCCC TNLQGEQSSQNLAIPPHPPIPPFISPLPLPEASPRANGILCTQISPTPMTQNSGTPPQNR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHH FRETHSDSTSNFSAIPTSEAEQSVEADPISAPTSPLILAHVSHQDEGPLVQTLATKIMAF HHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH IERQTPIRLNTWFTPEDQAEMEQIIRNTSDRSQTITMSFLTCLSGMVASFALAVSQKNKS HHCCCCEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YELDASRLTILQREAYSQIKEQDQASYEVLTEQSLRIEELMQTRKDVYRIQYEKMQTEQM EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH HLKEIHKGNTRGWFAPHFGIAYHAETVFKLLEQRRLNLKISLNDLNRLPENSPPRTSHEV HHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCHHHH TQIVTTINTKLAELEEQILVHQKTLKSLEGESADQFRCESYYLHFNRMKKQSRCYDENQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH RIAQRLRELEAETNTELLPSQMAQRKFEIAMIRAYQKKIEKRLINLRTLLSGYKIMEGER HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCE VTVNVRRNNSRSAELKKGADLLNSLVALQERVTIHSSLAHISPPEIEKNLLKQDYLKFLE EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LQSSFSVVHNTFKERTVSLESNMIKCFSNVEKIESCLKTFRQQMANLTVEIKHRTCWFKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECEEEEEE EITPPAQPWWRFIINFLFLQRRFD ECCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA