| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447189
Identifier: 46447189
GI number: 46447189
Start: 1861286
End: 1861846
Strand: Direct
Name: 46447189
Synonym: pc1555
Alternate gene names: NA
Gene position: 1861286-1861846 (Clockwise)
Preceding gene: 46447188
Following gene: 46447195
Centisome position: 77.09
GC content: 36.9
Gene sequence:
>561_bases ATGAAAATGTTATCAAAAACTGTACTGACTTCTATTTTATCGACTTTAGTTGCTGCTAATGTAATGGCTCAATGTTCTTC AAGTGGATATCCGTGGAGTAGCCATAAACGCTGTTATGGTTCATCTCAACAGCAACGTGAATCTTACCATGCTCCAATGG ATCAAAATTGTTTAAAAGGATATCCATGGGGTAGCTATAAACGCTCTCATGGCTCACCTCAACAACAGGGTCCCTACAAT GCTCCAAATGATCAAGGCGACTACTATCAATACTATAATGGAAACGCTTATTACCATGACTTTGACGGTCATGGAGTGCA CAAATATCCAACTTATGGTGATCATCCAGAATTTAATCCAGGTTATGACCGTCCAATAGACCGTAATTACCAAGGGTTTA ATGAGAATCATGGGCATCAAAATAGCACTGATCAAGCAATTGCTTTTGAAGATCTACAAGGAAACTATAATCCTGATGAT CTAAATAAGAATAATCCCTCTTATAGTCAAACGAATGAAGTAAATCAAAACATAAATTCATCGACACAAAAAGCTCATTA A
Upstream 100 bases:
>100_bases AAATTCAATATACACAAAATCTCAAATCATTTTGCTCATGCTGTAATTTTAACCGTTTTCCAATCTAGCAACATTTAAGA CAAAACATAAGGAGATTTGT
Downstream 100 bases:
>100_bases TACTTAGCTTTAGCTTGATAACGTCCAGACCACACAAAATTTTATTTGTGTGGTCTTTTTTTTATAAACATTGATTTCTT ACAAACAGCTTTATTTTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MKMLSKTVLTSILSTLVAANVMAQCSSSGYPWSSHKRCYGSSQQQRESYHAPMDQNCLKGYPWGSYKRSHGSPQQQGPYN APNDQGDYYQYYNGNAYYHDFDGHGVHKYPTYGDHPEFNPGYDRPIDRNYQGFNENHGHQNSTDQAIAFEDLQGNYNPDD LNKNNPSYSQTNEVNQNINSSTQKAH
Sequences:
>Translated_186_residues MKMLSKTVLTSILSTLVAANVMAQCSSSGYPWSSHKRCYGSSQQQRESYHAPMDQNCLKGYPWGSYKRSHGSPQQQGPYN APNDQGDYYQYYNGNAYYHDFDGHGVHKYPTYGDHPEFNPGYDRPIDRNYQGFNENHGHQNSTDQAIAFEDLQGNYNPDD LNKNNPSYSQTNEVNQNINSSTQKAH >Mature_186_residues MKMLSKTVLTSILSTLVAANVMAQCSSSGYPWSSHKRCYGSSQQQRESYHAPMDQNCLKGYPWGSYKRSHGSPQQQGPYN APNDQGDYYQYYNGNAYYHDFDGHGVHKYPTYGDHPEFNPGYDRPIDRNYQGFNENHGHQNSTDQAIAFEDLQGNYNPDD LNKNNPSYSQTNEVNQNINSSTQKAH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21179; Mature: 21179
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMLSKTVLTSILSTLVAANVMAQCSSSGYPWSSHKRCYGSSQQQRESYHAPMDQNCLKG CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHCC YPWGSYKRSHGSPQQQGPYNAPNDQGDYYQYYNGNAYYHDFDGHGVHKYPTYGDHPEFNP CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCC GYDRPIDRNYQGFNENHGHQNSTDQAIAFEDLQGNYNPDDLNKNNPSYSQTNEVNQNINS CCCCCCCCCCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC STQKAH CCCCCC >Mature Secondary Structure MKMLSKTVLTSILSTLVAANVMAQCSSSGYPWSSHKRCYGSSQQQRESYHAPMDQNCLKG CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHCC YPWGSYKRSHGSPQQQGPYNAPNDQGDYYQYYNGNAYYHDFDGHGVHKYPTYGDHPEFNP CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCC GYDRPIDRNYQGFNENHGHQNSTDQAIAFEDLQGNYNPDDLNKNNPSYSQTNEVNQNINS CCCCCCCCCCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC STQKAH CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA