| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447129
Identifier: 46447129
GI number: 46447129
Start: 1778935
End: 1780614
Strand: Direct
Name: 46447129
Synonym: pc1495
Alternate gene names: NA
Gene position: 1778935-1780614 (Clockwise)
Preceding gene: 46447128
Following gene: 46447130
Centisome position: 73.68
GC content: 38.04
Gene sequence:
>1680_bases TTGCATATTTCTAGTTTTGAGCTTAATTCTAGTCATCTTGTCTATACAACGCTTCCACCTTACTATCCCCTTCAAGACAT TAACGATCAACTTGAGAATGAAAATACTTCCTTAGATAATTCTTTGCCTAATCTAGAAGAAACTAATGCACCAACGATTC CAGCTCCCACTCTTTTACCTTCATCTGATGAAATTCAAATAAGCTTTCAAGAGGGAACTTCTCTAACTATTTCTCACTCT CAGCTAGCTTTATTAAGGGAAAAATCACACTACTTTAAGAATCTGTGGTCGGGGCAATTTCAAGAAACCCTGCAACACCC TCTCGATTTAACACAAAAAGATTTTACGCTTTTACTCAATTGCCTGATGGACGCTAACTTTAAAGTTCCCTTAGAAGAGA TCTCTTCTTCTATTCAACTCGCCGATTATTATGAACTAACAGGAGTGGTAAAAAGTTTAGAAGAGCAACTGATTGATGGA TACAAATCACAGAAATTTGAAACTTTTAACTCAACTGAAGAAAGTTTAATCGGATTAAAAGAGCTTTTAAATTTTGCGCA TCGCTGTCAATTAAATAGATTGAAAAACTATTTAGAATTTATTGTTGTGAGCACCTTATTAAACCAGACCAGTCAGTTAG CGGAGTTTGAAAGAATTATAAATCACCTCTCAAATGAGATAGAAGCACTCAATTTTTCAAACAATACTTATTTAACAGAT GCTCATTTCTCAGCTTTAAAAGATTGTAAAAATTTAAAAGTGCTTCATTTAGTGTCATGCCAGGCTATTACGGACGATAG ATTAGCGCATTTAACACCCTTAACGGCTTTGCAGCATCTAAATCTAAGTAAGTGCAGGAAACTCACCGATACAGGCTTGG TTCATTTAACACCCTTAACGGCTTTGCAGCATCTAGATTTAAGCTACTGTAAAAATCTCACCGATGCAGGATTAGCGCAT TTAACACCCTTGAAGGCTTTGCAGCATCTAAATTTACGTGGCTTTGGAAAACTTACCGATGCAGGTTTGGTTCATTTAAC ACCCTTAACGGCTTTGCAGTATTTAGATCTAAGTTGGTGCAAGAATCTCACCGATGCAGGATTAGCCCATTTGACACCTT TAACTGGTTTGCAGCATCTAAATCTGAGTGGGTGGTATCATCTCACCGATGCAGGATTAGCCCGTTTAATATTTTTAACA GCTTTGCAGCATTTAGATTTAAGCGATTGTGAGAATCTCACTAGTGCAGGATTAGAACGTTTGACATCCTTAACCGCTTT GCAACATCTAGGTCTAAGCTACTGTATGAATCTCACCGATGCAGGCTTGATTCATTTAACACCTTTAACTGCTTTGCAGC ATCTAAATCTGAGTGGGTGCTTTCATCTCACCGATGCAGGATTAGTCCATTTGACACCCTTAACGGCTTTGCAGCATCTT AATCTAGGTGGGTGTGAGAATCTCACCGATGCAGGATTAGCCTATTTGACACCCTTAACGGCTTTGCAGCATCTAAATCT AAGTAGGTGCAAGCATCTCACCGAGGCAGGATTAACCCATTTGGCATCTTTAACAGCTTTGCAGCATCTAAATCTAAGCT ATTGCGATAATCTCACCGATGCAGGATTAGAACGTTTTAAAGCTTTAGCAGCTTCACTCAATTTAAAAATTATTAGATAG
Upstream 100 bases:
>100_bases CCTATTTTAATTTATTAATATTGCAATAATTTTTATCTATACATCATAATTTTAAAATATCTATAAATTAAAATTTATTG CACTCATTGGGATGGTCATT
Downstream 100 bases:
>100_bases AAAAAACTTTCAATAAAAGAGAAACCTGGCGGCGAAAATAAAAGAGTGCTTTCCCCTAAGAAAGTGAAGGATAAAATTTC ATTAAAGTTTATCGACTCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 559; Mature: 559
Protein sequence:
>559_residues MHISSFELNSSHLVYTTLPPYYPLQDINDQLENENTSLDNSLPNLEETNAPTIPAPTLLPSSDEIQISFQEGTSLTISHS QLALLREKSHYFKNLWSGQFQETLQHPLDLTQKDFTLLLNCLMDANFKVPLEEISSSIQLADYYELTGVVKSLEEQLIDG YKSQKFETFNSTEESLIGLKELLNFAHRCQLNRLKNYLEFIVVSTLLNQTSQLAEFERIINHLSNEIEALNFSNNTYLTD AHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAH LTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLT ALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHL NLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAASLNLKIIR
Sequences:
>Translated_559_residues MHISSFELNSSHLVYTTLPPYYPLQDINDQLENENTSLDNSLPNLEETNAPTIPAPTLLPSSDEIQISFQEGTSLTISHS QLALLREKSHYFKNLWSGQFQETLQHPLDLTQKDFTLLLNCLMDANFKVPLEEISSSIQLADYYELTGVVKSLEEQLIDG YKSQKFETFNSTEESLIGLKELLNFAHRCQLNRLKNYLEFIVVSTLLNQTSQLAEFERIINHLSNEIEALNFSNNTYLTD AHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAH LTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLT ALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHL NLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAASLNLKIIR >Mature_559_residues MHISSFELNSSHLVYTTLPPYYPLQDINDQLENENTSLDNSLPNLEETNAPTIPAPTLLPSSDEIQISFQEGTSLTISHS QLALLREKSHYFKNLWSGQFQETLQHPLDLTQKDFTLLLNCLMDANFKVPLEEISSSIQLADYYELTGVVKSLEEQLIDG YKSQKFETFNSTEESLIGLKELLNFAHRCQLNRLKNYLEFIVVSTLLNQTSQLAEFERIINHLSNEIEALNFSNNTYLTD AHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAH LTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLT ALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHL NLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAASLNLKIIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=282, Percent_Identity=33.6879432624113, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI284447308, Length=310, Percent_Identity=32.9032258064516, Blast_Score=113, Evalue=5e-25, Organism=Homo sapiens, GI6912466, Length=299, Percent_Identity=30.4347826086957, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI161333852, Length=396, Percent_Identity=26.2626262626263, Blast_Score=110, Evalue=3e-24, Organism=Homo sapiens, GI161333854, Length=394, Percent_Identity=26.1421319796954, Blast_Score=109, Evalue=9e-24, Organism=Homo sapiens, GI27734755, Length=423, Percent_Identity=26.241134751773, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI284447314, Length=272, Percent_Identity=32.7205882352941, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI296531375, Length=411, Percent_Identity=26.5206812652068, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI289666746, Length=242, Percent_Identity=35.5371900826446, Blast_Score=79, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25151694, Length=307, Percent_Identity=28.9902280130293, Blast_Score=93, Evalue=3e-19, Organism=Caenorhabditis elegans, GI25151696, Length=307, Percent_Identity=28.9902280130293, Blast_Score=93, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6322549, Length=394, Percent_Identity=29.4416243654822, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI17647819, Length=302, Percent_Identity=32.7814569536424, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI21357913, Length=284, Percent_Identity=32.0422535211268, Blast_Score=96, Evalue=9e-20, Organism=Drosophila melanogaster, GI24662818, Length=377, Percent_Identity=29.7082228116711, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI24652783, Length=286, Percent_Identity=29.7202797202797, Blast_Score=76, Evalue=6e-14, Organism=Drosophila melanogaster, GI161076547, Length=286, Percent_Identity=29.7202797202797, Blast_Score=76, Evalue=8e-14, Organism=Drosophila melanogaster, GI161076545, Length=286, Percent_Identity=29.7202797202797, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI161076549, Length=286, Percent_Identity=29.7202797202797, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24646754, Length=205, Percent_Identity=33.1707317073171, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI19921840, Length=349, Percent_Identity=26.9340974212034, Blast_Score=69, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62103; Mature: 62103
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHISSFELNSSHLVYTTLPPYYPLQDINDQLENENTSLDNSLPNLEETNAPTIPAPTLLP CCCCCEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSDEIQISFQEGTSLTISHSQLALLREKSHYFKNLWSGQFQETLQHPLDLTQKDFTLLLN CCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHCHHCCCHHHHHHHHH CLMDANFKVPLEEISSSIQLADYYELTGVVKSLEEQLIDGYKSQKFETFNSTEESLIGLK HHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHH ELLNFAHRCQLNRLKNYLEFIVVSTLLNQTSQLAEFERIINHLSNEIEALNFSNNTYLTD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEH AHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKCRKLTDTGLVHLTPLT HHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECHHH ALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWC HHHHCCHHHHCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHH KNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLER CCCHHCCHHHHCHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHL HHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCCEEEECCCCEEEECHHHHHHHC NLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTD CCCCCCCCHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHH AGLERFKALAASLNLKIIR HHHHHHHHHHHHCCCEEEC >Mature Secondary Structure MHISSFELNSSHLVYTTLPPYYPLQDINDQLENENTSLDNSLPNLEETNAPTIPAPTLLP CCCCCEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSDEIQISFQEGTSLTISHSQLALLREKSHYFKNLWSGQFQETLQHPLDLTQKDFTLLLN CCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHCHHCCCHHHHHHHHH CLMDANFKVPLEEISSSIQLADYYELTGVVKSLEEQLIDGYKSQKFETFNSTEESLIGLK HHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHH ELLNFAHRCQLNRLKNYLEFIVVSTLLNQTSQLAEFERIINHLSNEIEALNFSNNTYLTD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEH AHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKCRKLTDTGLVHLTPLT HHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECHHH ALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWC HHHHCCHHHHCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHH KNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLER CCCHHCCHHHHCHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHL HHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCCEEEECCCCEEEECHHHHHHHC NLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTD CCCCCCCCHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHH AGLERFKALAASLNLKIIR HHHHHHHHHHHHCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA