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The map label for this gene is yibD [C]

Identifier: 46447003

GI number: 46447003

Start: 1638094

End: 1639224

Strand: Direct

Name: yibD [C]

Synonym: pc1369

Alternate gene names: 46447003

Gene position: 1638094-1639224 (Clockwise)

Preceding gene: 46447002

Following gene: 46447009

Centisome position: 67.85

GC content: 35.1

Gene sequence:

>1131_bases
ATGTTTATGCATTCTTCTCCTCTAGTCAGCATCCTTATCCCTGTTTTTAACCAAGTTCCTTTTATCTTTGAAGCTCTCAA
TAGTGTTTTACAACAAACTTATCCTAATTTCGAGGTTTTGATCGTCGATGATGGATCAACAGATGGCACAGCATCTATTT
GCCAAGAATTCTGTCAAAAAGATTCTCGCTTTCAATATTTATATCAAACTAACAAGGGCCCCTCTGCTGCTCGTAATCGA
GGAATTGCGGCTTCGCATGGAGAGTACTTTTGCTTACTTGATGGAGATGATAAGATGGATTTTCAAAGGATTGCCGTTCA
ATTAAAGGTTTTAACAGAAAATCCTACCCTTGATATTGTTTATACTGCCCTTCTTTTAATCGATAGCAATGGCAGTACAA
TCGGAGAAATGCATGGACAAGAAATCAATCCAGAAAATTTTTTAGCCACACTTCTTTTTCGAAATGTCATTCCAGGGCCT
AGTACAATTATGGCCAAACGAGAATGTTTAACTTCACATCCTTATCATGAACATTTTGTTCATGCGGAAGATTATGAGCT
CATGATTCGGTTAGCTCATTTTTATCGATTTCAATATATTGACCTTCCTCTAACATACTATAGAAGACATCTAAATAATC
TTTCTAATCATTTAAAAGCTCACCGACAAGCGGAATTAAAGGTAATTCAACAATATACCCAGTCGAAAATTGAAGCGATT
GTTGATCAAACTTCTTTCCCTAGTGATGAAAAGACTTTGCTAAAAGGTAAAATTTTATTTAATCAAGAAAGGTTTCCTCA
AGCTTTGTTTTATTTTCAACAACTCAACGACTCTTTTTCTCGATTTTATGAAGGAAATTGCTTTGTAAAATTACAAGATA
GGAAATCTGCAAAAAGCGCTTATGAACAAGCCCTTCTCTTAGATACAACAAATGCGGCTTGCTATAACAACTTAGGAAAT
ATTTTTGCTCAAGGTCAACAATGGCAAGATGCTCGATTTTGTTGGGAAAAAGCCCTTTCTCTTAAACCTGGTTATTTAGA
TGCCAAAGAAAATTTAGATTATTTTAAACAATCTTTTGAGTGGCGTTATACATGGAGAGAGTTGAGGAGGGATTTGCTAG
TTTATCATTGA

Upstream 100 bases:

>100_bases
AAAATCGATTTCTACAGTTGATTAGAGAAATTATCTCAACGATGGACTTGATATAATACTGTATGTTATTTAATTGAGTT
TTGGATTTATCAATTGGAAA

Downstream 100 bases:

>100_bases
TAAATTTGCTCCGGTATTTGCAAATATAAAAAAATTGATGCAATTTGACAATTTCTAATGATTTTACTTCTAATATAGGA
TCAACTGGAAAAAATAAAAG

Product: putative glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MFMHSSPLVSILIPVFNQVPFIFEALNSVLQQTYPNFEVLIVDDGSTDGTASICQEFCQKDSRFQYLYQTNKGPSAARNR
GIAASHGEYFCLLDGDDKMDFQRIAVQLKVLTENPTLDIVYTALLLIDSNGSTIGEMHGQEINPENFLATLLFRNVIPGP
STIMAKRECLTSHPYHEHFVHAEDYELMIRLAHFYRFQYIDLPLTYYRRHLNNLSNHLKAHRQAELKVIQQYTQSKIEAI
VDQTSFPSDEKTLLKGKILFNQERFPQALFYFQQLNDSFSRFYEGNCFVKLQDRKSAKSAYEQALLLDTTNAACYNNLGN
IFAQGQQWQDARFCWEKALSLKPGYLDAKENLDYFKQSFEWRYTWRELRRDLLVYH

Sequences:

>Translated_376_residues
MFMHSSPLVSILIPVFNQVPFIFEALNSVLQQTYPNFEVLIVDDGSTDGTASICQEFCQKDSRFQYLYQTNKGPSAARNR
GIAASHGEYFCLLDGDDKMDFQRIAVQLKVLTENPTLDIVYTALLLIDSNGSTIGEMHGQEINPENFLATLLFRNVIPGP
STIMAKRECLTSHPYHEHFVHAEDYELMIRLAHFYRFQYIDLPLTYYRRHLNNLSNHLKAHRQAELKVIQQYTQSKIEAI
VDQTSFPSDEKTLLKGKILFNQERFPQALFYFQQLNDSFSRFYEGNCFVKLQDRKSAKSAYEQALLLDTTNAACYNNLGN
IFAQGQQWQDARFCWEKALSLKPGYLDAKENLDYFKQSFEWRYTWRELRRDLLVYH
>Mature_376_residues
MFMHSSPLVSILIPVFNQVPFIFEALNSVLQQTYPNFEVLIVDDGSTDGTASICQEFCQKDSRFQYLYQTNKGPSAARNR
GIAASHGEYFCLLDGDDKMDFQRIAVQLKVLTENPTLDIVYTALLLIDSNGSTIGEMHGQEINPENFLATLLFRNVIPGP
STIMAKRECLTSHPYHEHFVHAEDYELMIRLAHFYRFQYIDLPLTYYRRHLNNLSNHLKAHRQAELKVIQQYTQSKIEAI
VDQTSFPSDEKTLLKGKILFNQERFPQALFYFQQLNDSFSRFYEGNCFVKLQDRKSAKSAYEQALLLDTTNAACYNNLGN
IFAQGQQWQDARFCWEKALSLKPGYLDAKENLDYFKQSFEWRYTWRELRRDLLVYH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI57770468, Length=172, Percent_Identity=31.9767441860465, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI1790044, Length=98, Percent_Identity=33.6734693877551, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788372, Length=199, Percent_Identity=29.6482412060301, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787259, Length=140, Percent_Identity=30, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 43827; Mature: 43827

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMHSSPLVSILIPVFNQVPFIFEALNSVLQQTYPNFEVLIVDDGSTDGTASICQEFCQK
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCC
DSRFQYLYQTNKGPSAARNRGIAASHGEYFCLLDGDDKMDFQRIAVQLKVLTENPTLDIV
CCCEEEEEECCCCCHHHHCCCCEECCCCEEEEECCCCCCCHHHHHEEEEEEECCCCHHHE
YTALLLIDSNGSTIGEMHGQEINPENFLATLLFRNVIPGPSTIMAKRECLTSHPYHEHFV
EEEEHEECCCCCEEHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHCC
HAEDYELMIRLAHFYRFQYIDLPLTYYRRHLNNLSNHLKAHRQAELKVIQQYTQSKIEAI
CCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDQTSFPSDEKTLLKGKILFNQERFPQALFYFQQLNDSFSRFYEGNCFVKLQDRKSAKSA
HHHCCCCCCCHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
YEQALLLDTTNAACYNNLGNIFAQGQQWQDARFCWEKALSLKPGYLDAKENLDYFKQSFE
HHHHHEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
WRYTWRELRRDLLVYH
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFMHSSPLVSILIPVFNQVPFIFEALNSVLQQTYPNFEVLIVDDGSTDGTASICQEFCQK
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCC
DSRFQYLYQTNKGPSAARNRGIAASHGEYFCLLDGDDKMDFQRIAVQLKVLTENPTLDIV
CCCEEEEEECCCCCHHHHCCCCEECCCCEEEEECCCCCCCHHHHHEEEEEEECCCCHHHE
YTALLLIDSNGSTIGEMHGQEINPENFLATLLFRNVIPGPSTIMAKRECLTSHPYHEHFV
EEEEHEECCCCCEEHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHCC
HAEDYELMIRLAHFYRFQYIDLPLTYYRRHLNNLSNHLKAHRQAELKVIQQYTQSKIEAI
CCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDQTSFPSDEKTLLKGKILFNQERFPQALFYFQQLNDSFSRFYEGNCFVKLQDRKSAKSA
HHHCCCCCCCHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
YEQALLLDTTNAACYNNLGNIFAQGQQWQDARFCWEKALSLKPGYLDAKENLDYFKQSFE
HHHHHEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
WRYTWRELRRDLLVYH
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]