| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446910
Identifier: 46446910
GI number: 46446910
Start: 1527642
End: 1529645
Strand: Direct
Name: 46446910
Synonym: pc1276
Alternate gene names: NA
Gene position: 1527642-1529645 (Clockwise)
Preceding gene: 46446909
Following gene: 46446912
Centisome position: 63.27
GC content: 38.52
Gene sequence:
>2004_bases TTGTGCAAAACAATTTTTCAGTCCTTTCTCAACTTATTCTTTAATTATCTCGAAAAAGAGCAGCTTCAGTCTCAATGGAG AGAGATTTCTTGGGGACGAAAAGAAATTACGATTCCCAAATTTATTGCAAGTCGCCTCGCATCAATTGATAAATTTGAGG ATGAAAACGAGCTTTTATTAAATTCTTTAGCTAACCCAGAAGGATTAAATGCTTTAAAGAACACTTCCCCCAAAAAAATA AAATCATCCATAACTCCACAATCTTCGGATCTTTTCTCTTCATCCCAGGAATTTAAACTGAGATTTCAGGATGAAACTTC GCTAAACATCTCGTATTCTCAACTAGCTTTGTTAAGGGAAGAATCGCCCTATTTTAAAAGTCTTTGGTCGGGAAATTTTC GAGAAACCCTTCAAAATCCTCTTGCTTTAACGCAAACAGAGTTTACTCATCTGCTCGATTGCCTGGAATATTCTATTTCT TTTGTTCCTTTGGAAGATATCCTTTCTTTCATTCAACTAGCCGATTATTATCAACTGTCAGAAGCTGGGAAAAAATTAGA AAAACAGCTGATCGATGCGTATAAATCCCAAAAATTGGAACCGTTTAACTCTACCACAGATAGTTTAGTGGAATTAAAAG CACTTTTAAATTTTGCGCAGCAATACCAACTAAATACTTTAAAAAATTATTTAGAACTTATAGTTGTGAGTTCTTTATTA AACCAAGCTTCTCATGTAACCGAATTTGAAAAAATTTTAAAGCACTTCTCAAATGAAATAGAAAGACTCAATTTTTCAAA GAACATCTTTTTGACTGATGCCCATCTGTTAGCGTTAAAAAATTGTAAAAATTTAAAAGCACTACATCTCCAGGAATGCG ACAAACTTACCGACGCAGGATTAGCCCATTTAGCATCCTTGATGGCTTTGCAGCATTTAAATCTGAACGGATGCTGGGAA CTCACCGACGCAGGATTAGCCCATTTAGCATCCTTGATGGCTTTGCAGCATTTAAATCTGGCTAAGTGCCATAAAATCAC CGACGCAGGATTAGCCCATTTGACATCTTTGGTGGCTTTACAGCATTTAGATCTGAGCTGTTGTAGAAATCTTACTGACG CTGGATTAACGCATTTGAGACCTTTAGTGGCTTTAACGCATTTAAATCTGGCTAAGTGCCATAAAATCACCGACGCAGGA TTAGCCCATTTGACATCTTTGGTGGCTTTACAGCATTTAGACCTAAGCTATTGCGAAAAACTTACTGACGCTGGATTAGC CCATTTGACACCTTTAGTGGCTTTACAGCATTTAGATCTGAGTTACAGCCACCATTTTACGAATGCAGGATTAGCCCATT TGACATCTTTGGTGGCTTTACAGCATTTGAATTTGAATAGCTGCTATAAATTCACTGATGCTGGATTAGCCCATTTGACA TCTTTGGTGGCTTTGCAGCATTTAGACCTAAGCTGTTGCAGAAATCTTACTGACGCTGGATTAGCCCATTTGGCACCTTT AGTGGCTTTACAGCATTTAGATCTGAGTTACAGCCACCATTTTACGAATGCAGGATTAGCCCATTTGACATCTTTGGTGG CTTTGCAGCATTTAGACCTAAGCTGTTGCAGAAATCTTACTGACGCTGGATTAGCCCATTTGACATCTTTGGTAGCTTTA CAGCACTTAGATCTAAGTTCGTGCAAAAAACTCACGGATGCTGGATTAGAGCATTTGACACCTTTAGTGGCTTTACAGCA TTTGGATCTGAGTTCGTGCAAAAAACTCACGGATGCTGGATTAGCGCATTTGGCACCTTTAGTGGCTTTACAGCATTTGG ATCTGAGTTCGTGCAAAAAACTCACGGATGCTGGATTAGCCCATTTGGCACCTTTAGTGGCTTTGCAGCATTTAAATTTG AATTGGTGCGATAAGCTTACCGACGCTGGAGTGGCGCATTTTAAATCCTCAGTAGCTCCCCTCCATTTAAAAATTATTTA TTAA
Upstream 100 bases:
>100_bases TAATCCAAGAGTTAATCCTAGTGATTTCGTTGTCAATACAGACACTCATTCTTACTATCAATCGAACTATCGTTTAAAAT TTTCTGAACGAATTCATTTA
Downstream 100 bases:
>100_bases AGCAACTCTTAATGACGTTAAATACAAAAATATTATAGGTTTTTTTAAATTAAATTTTCATAGTTCTCACAAAATAATTA AAAAAAGAAAGTTCAATAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 667; Mature: 667
Protein sequence:
>667_residues MCKTIFQSFLNLFFNYLEKEQLQSQWREISWGRKEITIPKFIASRLASIDKFEDENELLLNSLANPEGLNALKNTSPKKI KSSITPQSSDLFSSSQEFKLRFQDETSLNISYSQLALLREESPYFKSLWSGNFRETLQNPLALTQTEFTHLLDCLEYSIS FVPLEDILSFIQLADYYQLSEAGKKLEKQLIDAYKSQKLEPFNSTTDSLVELKALLNFAQQYQLNTLKNYLELIVVSSLL NQASHVTEFEKILKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASLMALQHLNLNGCWE LTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAG LAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLT SLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVAL QHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNL NWCDKLTDAGVAHFKSSVAPLHLKIIY
Sequences:
>Translated_667_residues MCKTIFQSFLNLFFNYLEKEQLQSQWREISWGRKEITIPKFIASRLASIDKFEDENELLLNSLANPEGLNALKNTSPKKI KSSITPQSSDLFSSSQEFKLRFQDETSLNISYSQLALLREESPYFKSLWSGNFRETLQNPLALTQTEFTHLLDCLEYSIS FVPLEDILSFIQLADYYQLSEAGKKLEKQLIDAYKSQKLEPFNSTTDSLVELKALLNFAQQYQLNTLKNYLELIVVSSLL NQASHVTEFEKILKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASLMALQHLNLNGCWE LTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAG LAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLT SLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVAL QHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNL NWCDKLTDAGVAHFKSSVAPLHLKIIY >Mature_667_residues MCKTIFQSFLNLFFNYLEKEQLQSQWREISWGRKEITIPKFIASRLASIDKFEDENELLLNSLANPEGLNALKNTSPKKI KSSITPQSSDLFSSSQEFKLRFQDETSLNISYSQLALLREESPYFKSLWSGNFRETLQNPLALTQTEFTHLLDCLEYSIS FVPLEDILSFIQLADYYQLSEAGKKLEKQLIDAYKSQKLEPFNSTTDSLVELKALLNFAQQYQLNTLKNYLELIVVSSLL NQASHVTEFEKILKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASLMALQHLNLNGCWE LTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAG LAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLT SLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVAL QHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNL NWCDKLTDAGVAHFKSSVAPLHLKIIY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=309, Percent_Identity=35.2750809061489, Blast_Score=147, Evalue=5e-35, Organism=Homo sapiens, GI161333852, Length=500, Percent_Identity=25.6, Blast_Score=126, Evalue=6e-29, Organism=Homo sapiens, GI284447308, Length=332, Percent_Identity=32.8313253012048, Blast_Score=118, Evalue=2e-26, Organism=Homo sapiens, GI161333854, Length=464, Percent_Identity=25.4310344827586, Blast_Score=109, Evalue=1e-23, Organism=Homo sapiens, GI6912466, Length=286, Percent_Identity=31.1188811188811, Blast_Score=107, Evalue=5e-23, Organism=Homo sapiens, GI27734755, Length=334, Percent_Identity=31.437125748503, Blast_Score=106, Evalue=8e-23, Organism=Homo sapiens, GI296531375, Length=287, Percent_Identity=31.0104529616725, Blast_Score=95, Evalue=3e-19, Organism=Homo sapiens, GI284447314, Length=266, Percent_Identity=32.7067669172932, Blast_Score=94, Evalue=5e-19, Organism=Homo sapiens, GI289666746, Length=248, Percent_Identity=33.8709677419355, Blast_Score=94, Evalue=5e-19, Organism=Homo sapiens, GI16306588, Length=300, Percent_Identity=29.6666666666667, Blast_Score=70, Evalue=8e-12, Organism=Caenorhabditis elegans, GI25151694, Length=331, Percent_Identity=29.0030211480363, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI25151696, Length=331, Percent_Identity=29.0030211480363, Blast_Score=97, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6322549, Length=409, Percent_Identity=26.4058679706601, Blast_Score=95, Evalue=3e-20, Organism=Drosophila melanogaster, GI17647819, Length=285, Percent_Identity=35.7894736842105, Blast_Score=141, Evalue=2e-33, Organism=Drosophila melanogaster, GI24662818, Length=260, Percent_Identity=35, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI21357913, Length=290, Percent_Identity=32.0689655172414, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24652783, Length=313, Percent_Identity=30.9904153354633, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI161076545, Length=313, Percent_Identity=30.9904153354633, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI161076549, Length=313, Percent_Identity=30.9904153354633, Blast_Score=93, Evalue=7e-19, Organism=Drosophila melanogaster, GI161076547, Length=313, Percent_Identity=30.9904153354633, Blast_Score=93, Evalue=7e-19, Organism=Drosophila melanogaster, GI19921840, Length=355, Percent_Identity=25.9154929577465, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI24646754, Length=239, Percent_Identity=30.5439330543933, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74016; Mature: 74016
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCKTIFQSFLNLFFNYLEKEQLQSQWREISWGRKEITIPKFIASRLASIDKFEDENELLL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH NSLANPEGLNALKNTSPKKIKSSITPQSSDLFSSSQEFKLRFQDETSLNISYSQLALLRE HHCCCCCCCCHHHCCCHHHHHHCCCCCCHHHHCCCCHHEEEECCCCCCCCHHHHHHHHHC ESPYFKSLWSGNFRETLQNPLALTQTEFTHLLDCLEYSISFVPLEDILSFIQLADYYQLS CCHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH EAGKKLEKQLIDAYKSQKLEPFNSTTDSLVELKALLNFAQQYQLNTLKNYLELIVVSSLL HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQASHVTEFEKILKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAG HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHH LAHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVAL HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH QHLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDLSYCEK HHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLT HHHCCHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH SLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDL HHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCH SCCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAG HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNLNWCDKLTDAGVAHFKSSVAP HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC LHLKIIY EEEEEEC >Mature Secondary Structure MCKTIFQSFLNLFFNYLEKEQLQSQWREISWGRKEITIPKFIASRLASIDKFEDENELLL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH NSLANPEGLNALKNTSPKKIKSSITPQSSDLFSSSQEFKLRFQDETSLNISYSQLALLRE HHCCCCCCCCHHHCCCHHHHHHCCCCCCHHHHCCCCHHEEEECCCCCCCCHHHHHHHHHC ESPYFKSLWSGNFRETLQNPLALTQTEFTHLLDCLEYSISFVPLEDILSFIQLADYYQLS CCHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH EAGKKLEKQLIDAYKSQKLEPFNSTTDSLVELKALLNFAQQYQLNTLKNYLELIVVSSLL HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQASHVTEFEKILKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAG HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHH LAHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVAL HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH QHLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDLSYCEK HHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLT HHHCCHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH SLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDL HHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCH SCCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAG HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNLNWCDKLTDAGVAHFKSSVAP HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC LHLKIIY EEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA