Click here to switch to the map view.

The map label for this gene is ybgI [C]

Identifier: 46446807

GI number: 46446807

Start: 1400051

End: 1400809

Strand: Reverse

Name: ybgI [C]

Synonym: pc1173

Alternate gene names: 46446807

Gene position: 1400809-1400051 (Counterclockwise)

Preceding gene: 46446811

Following gene: 46446803

Centisome position: 58.02

GC content: 37.29

Gene sequence:

>759_bases
GTGATGATAAAATTAAGAAATTTGAAAGAGTTATTGACTCAAATTTTTCCGGAAGAAGGTTTGATAGATTATTGTCCGAA
TGGTTTACAAGTGGAAGGAAAAAGCGAAATAAAAATTTTAGCAACAGCTGTCTCAGCAAGTTTAAATACGATTCAAATGG
CCATAGAAAAAAATGTGGACGCACTTATTGTTCACCATGGAATTTTTTGGCAAAGAGATAGTTATGTGATCGAAGGAACT
AAAAGGGAAAAGCTTTTTACTTTACTGAAATCCGGGGTTTCTCTTTTCGCATACCATTTGCCCTTAGATAAGCATCTTAT
ATTAGGCAATAATTGGAAGGCAGCTCATGACTTGGGATGGGAAAAGTTAGAACCCTTCGCCTTTATGAATGGAATTCCAA
TTGGCGTCAAAGGAAAAATTAAACCGACAAAACGAGAGATTGTTAAAGCAAACCTGGAAAGGTATTATCAACATTCTGCT
AACTGTGCTTTGGGAGGGCCAGAGCTTATTCAAACTTTAGCTTTAGTGTCGGGGGGAGCTCATAAATCTATTTTAGACGC
AGGTCGAGATCGGGTAGATGCTTTCATCACGGGAAGCTTTGATGAGCCTACTTGGCATCAGGCATTTGAAGAAAAAATTA
ATTTTTATGCATTAGGGCATTCTGCGACTGAACGTGTAGGTCCGCAGGCATTAGCCAAATATTTAGAAGAACAATTAAAA
ACGCCTTGTTTATTTTTAGACGCATTTAACCCTTTTTAA

Upstream 100 bases:

>100_bases
GCAGTTTTTTATCCTTTTGTATAAGCTAAAAGGGGGGCTAATCGCGCAGAAGCAGACTCAAAACTTATAGTAACGCCGCA
TCTCCACAACAGGAAAACTT

Downstream 100 bases:

>100_bases
ATATGAGTTTTCTGATTTCCAGTTGTTGCTGAAAACATTCAGCAACAACTGTTCTATCTACTGTTATGTAGAAGAAGCTT
CTGAAGAAGCAGTAATATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MMIKLRNLKELLTQIFPEEGLIDYCPNGLQVEGKSEIKILATAVSASLNTIQMAIEKNVDALIVHHGIFWQRDSYVIEGT
KREKLFTLLKSGVSLFAYHLPLDKHLILGNNWKAAHDLGWEKLEPFAFMNGIPIGVKGKIKPTKREIVKANLERYYQHSA
NCALGGPELIQTLALVSGGAHKSILDAGRDRVDAFITGSFDEPTWHQAFEEKINFYALGHSATERVGPQALAKYLEEQLK
TPCLFLDAFNPF

Sequences:

>Translated_252_residues
MMIKLRNLKELLTQIFPEEGLIDYCPNGLQVEGKSEIKILATAVSASLNTIQMAIEKNVDALIVHHGIFWQRDSYVIEGT
KREKLFTLLKSGVSLFAYHLPLDKHLILGNNWKAAHDLGWEKLEPFAFMNGIPIGVKGKIKPTKREIVKANLERYYQHSA
NCALGGPELIQTLALVSGGAHKSILDAGRDRVDAFITGSFDEPTWHQAFEEKINFYALGHSATERVGPQALAKYLEEQLK
TPCLFLDAFNPF
>Mature_252_residues
MMIKLRNLKELLTQIFPEEGLIDYCPNGLQVEGKSEIKILATAVSASLNTIQMAIEKNVDALIVHHGIFWQRDSYVIEGT
KREKLFTLLKSGVSLFAYHLPLDKHLILGNNWKAAHDLGWEKLEPFAFMNGIPIGVKGKIKPTKREIVKANLERYYQHSA
NCALGGPELIQTLALVSGGAHKSILDAGRDRVDAFITGSFDEPTWHQAFEEKINFYALGHSATERVGPQALAKYLEEQLK
TPCLFLDAFNPF

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Escherichia coli, GI1786928, Length=252, Percent_Identity=39.2857142857143, Blast_Score=168, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 28247; Mature: 28247

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIKLRNLKELLTQIFPEEGLIDYCPNGLQVEGKSEIKILATAVSASLNTIQMAIEKNVD
CEEEHHHHHHHHHHHCCCCCCHHHCCCCCEECCCCCEEEEEHHHHHHHHHHHHHHHCCCC
ALIVHHGIFWQRDSYVIEGTKREKLFTLLKSGVSLFAYHLPLDKHLILGNNWKAAHDLGW
EEEEECCEEEECCCEEEECCCHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCHHHHCCH
EKLEPFAFMNGIPIGVKGKIKPTKREIVKANLERYYQHSANCALGGPELIQTLALVSGGA
HHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
HKSILDAGRDRVDAFITGSFDEPTWHQAFEEKINFYALGHSATERVGPQALAKYLEEQLK
HHHHHHCCHHHEEEEEECCCCCCHHHHHHHHCCCEEEECCCHHHHCCHHHHHHHHHHHHC
TPCLFLDAFNPF
CCEEEEECCCCC
>Mature Secondary Structure
MMIKLRNLKELLTQIFPEEGLIDYCPNGLQVEGKSEIKILATAVSASLNTIQMAIEKNVD
CEEEHHHHHHHHHHHCCCCCCHHHCCCCCEECCCCCEEEEEHHHHHHHHHHHHHHHCCCC
ALIVHHGIFWQRDSYVIEGTKREKLFTLLKSGVSLFAYHLPLDKHLILGNNWKAAHDLGW
EEEEECCEEEECCCEEEECCCHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCHHHHCCH
EKLEPFAFMNGIPIGVKGKIKPTKREIVKANLERYYQHSANCALGGPELIQTLALVSGGA
HHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
HKSILDAGRDRVDAFITGSFDEPTWHQAFEEKINFYALGHSATERVGPQALAKYLEEQLK
HHHHHHCCHHHEEEEEECCCCCCHHHHHHHHCCCEEEECCCHHHHCCHHHHHHHHHHHHC
TPCLFLDAFNPF
CCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]