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The map label for this gene is himD [H]

Identifier: 46446802

GI number: 46446802

Start: 1396313

End: 1396675

Strand: Reverse

Name: himD [H]

Synonym: pc1168

Alternate gene names: 46446802

Gene position: 1396675-1396313 (Counterclockwise)

Preceding gene: 46446803

Following gene: 46446801

Centisome position: 57.85

GC content: 38.84

Gene sequence:

>363_bases
GTGAAAAAAATGAAGGAGTGTGGCCTTATGGCAACCAGTACAAAGAAGAGCACAATGACAAAAAAGAAATTGATCAATTC
AATATCCCAGGACAAAGGAATTCATCCTAATGATGTTCGTCATGTAATTCAAGCTTTTCTCGATAAAATCACAGATTGCT
TATCACAAGGAGAGCGACTAGAATTTCGAGAATTTGGGGTATTTGAAGTTGTCGAAAGAAAGCAAAAAATCGGCCGTAAT
CCAAAAAACGCTGCAGTGCCTATTGTCATTCCTGCTCGCCAAGCTGTTAAGTTTACTCCTGGGAAAAAAATGCGGCAGGT
AGTTGAAATGGAAGAAAGTTATCTGGCAGAAATTAGTTCCTAG

Upstream 100 bases:

>100_bases
ATAGATATTTTCCTATACTTTGCTGAGAATAACGGCAAAAAGAACTTGATTGAAAATCAAAAGGATAAGAAAATATTAAG
AAACTTAAGTTAAGCAAACA

Downstream 100 bases:

>100_bases
TAGATATTCTTGATTAAACTCCATTAACAGGATTTGTTTAAAATTGAGTAATTGAAACTTTGAGTTTCAATAACACAATT
TATTTAAACAAGTTAAAATT

Product: putative integration host factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKKMKECGLMATSTKKSTMTKKKLINSISQDKGIHPNDVRHVIQAFLDKITDCLSQGERLEFREFGVFEVVERKQKIGRN
PKNAAVPIVIPARQAVKFTPGKKMRQVVEMEESYLAEISS

Sequences:

>Translated_120_residues
MKKMKECGLMATSTKKSTMTKKKLINSISQDKGIHPNDVRHVIQAFLDKITDCLSQGERLEFREFGVFEVVERKQKIGRN
PKNAAVPIVIPARQAVKFTPGKKMRQVVEMEESYLAEISS
>Mature_120_residues
MKKMKECGLMATSTKKSTMTKKKLINSISQDKGIHPNDVRHVIQAFLDKITDCLSQGERLEFREFGVFEVVERKQKIGRN
PKNAAVPIVIPARQAVKFTPGKKMRQVVEMEESYLAEISS

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 13623; Mature: 13623

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMKECGLMATSTKKSTMTKKKLINSISQDKGIHPNDVRHVIQAFLDKITDCLSQGERL
CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
EFREFGVFEVVERKQKIGRNPKNAAVPIVIPARQAVKFTPGKKMRQVVEMEESYLAEISS
CHHHCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHEECCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKMKECGLMATSTKKSTMTKKKLINSISQDKGIHPNDVRHVIQAFLDKITDCLSQGERL
CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
EFREFGVFEVVERKQKIGRNPKNAAVPIVIPARQAVKFTPGKKMRQVVEMEESYLAEISS
CHHHCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHEECCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935 [H]