| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446771
Identifier: 46446771
GI number: 46446771
Start: 1367579
End: 1368811
Strand: Direct
Name: 46446771
Synonym: pc1137
Alternate gene names: NA
Gene position: 1367579-1368811 (Clockwise)
Preceding gene: 46446770
Following gene: 46446773
Centisome position: 56.64
GC content: 37.39
Gene sequence:
>1233_bases ATGGATCCCATTCTTGGAGCAGGAACAGGCGCCCTATTAAATCAATTGTTTAATCGCGTTGATCAATCCATTGATCGAGC TAAAAATGCGGGTTTGGCTCTAGAGATGGAGGCAGGCTTTCAGGTTAGAAAAACAATTGAGAAAACACAAGTGGCTTATG CTGAGGTAATGAATCAAACTTTAGATCGAGTTGATCAAACTCTTGCAAACCAAATAAACGATATAAAAAATTTGGTTTTG GATCTAGAACAAAAAAATAAACGTACCATGCAAGAGATTGCCAGTCAGGCGCAAACGATTGCTAATACACTCCCCTTTCA TAATGACCGCCCTCAAGTTACTTCTTACACCCCATCGTATATTCAAAGATTACCAGGTGATTCTCGCCCCATATATATTA ATATTAAAGGCAATTTTGAACATGCAGCTGAGCCCGGTTACCAACCTCAGCTTACTTTTCATAAACAAACTTTTTCTCCT TGCATAGTCACAGGACAAAAATTAGAATTTCACGTTCCATTTAACACAGTATTTCCTACTTTAGCTTCTCATACTTTTAC TTATGTTGAAGGTGAATTAAATATTCCCTGGAAAACAACATGGTTAAAGATGCCACAAAAAGTTCAAAATGTTTTTCGAT TAACAATTGGTGCACTCCCAACTTCACCAGGCACTATTACCTTAGACTATACGCTGGATGTTTCAAAAAAAATTGAAAAA ATAAAGTCACAAATTGATTTTCTATCTTCGTGTTCGGATGCAGGAAATGAGGACAAAAAAGATTATCAGTTTACGCTTTA TGCAGATACGGGCTGGAATATTGAGCCAGGGACAACCAAAGTAAGAGAAGTCAGAGGAGCCGGAAGGCGCAGTGGACCTT ACCTTGTCAGCGACCAAGATGATCGAGCCGTTATCAGAGCAACAACAATAAAAAACACTGTGGATATAGGAGGAAAAGAA TCTGGATGGATGGAAATTGAAACTTCTTTCACACAATCAAAAATAGAAATAGTTCCTGAACCCCACACAAAACGCTTAGA TCTTAAGTGGGGAGAAAAACGAATTTTTAATTATCCTCTTGGCAAATGGAAAGTAACTTTAGTGGATTTAGAAAATAAAA CGTTGGAATTTCAAGGACCGGATATTTCTTCTTCACCTTATATCAAAATTTTAAGGGAAGGGACAGGCTTTGCTATCCTA GTTACTCCTCCTCAAGATATTCAAGATTTTTAA
Upstream 100 bases:
>100_bases TGTAAAACTTGTAGAAAAACAATTTGAATTTATAACAACAATTCCTGAAGAGCTAAAAGATATTTAAAGATTGTCTTAAT TAAAAAGGAGGATATGAATT
Downstream 100 bases:
>100_bases TATTAATTTATAAAAAAAGTATAGGGAGCTTTTAAAATTTTTACTTTAAAAAAATTAAAAGCTCCATATATACATATTTG ACAAAGAAAAACTCAAGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MDPILGAGTGALLNQLFNRVDQSIDRAKNAGLALEMEAGFQVRKTIEKTQVAYAEVMNQTLDRVDQTLANQINDIKNLVL DLEQKNKRTMQEIASQAQTIANTLPFHNDRPQVTSYTPSYIQRLPGDSRPIYINIKGNFEHAAEPGYQPQLTFHKQTFSP CIVTGQKLEFHVPFNTVFPTLASHTFTYVEGELNIPWKTTWLKMPQKVQNVFRLTIGALPTSPGTITLDYTLDVSKKIEK IKSQIDFLSSCSDAGNEDKKDYQFTLYADTGWNIEPGTTKVREVRGAGRRSGPYLVSDQDDRAVIRATTIKNTVDIGGKE SGWMEIETSFTQSKIEIVPEPHTKRLDLKWGEKRIFNYPLGKWKVTLVDLENKTLEFQGPDISSSPYIKILREGTGFAIL VTPPQDIQDF
Sequences:
>Translated_410_residues MDPILGAGTGALLNQLFNRVDQSIDRAKNAGLALEMEAGFQVRKTIEKTQVAYAEVMNQTLDRVDQTLANQINDIKNLVL DLEQKNKRTMQEIASQAQTIANTLPFHNDRPQVTSYTPSYIQRLPGDSRPIYINIKGNFEHAAEPGYQPQLTFHKQTFSP CIVTGQKLEFHVPFNTVFPTLASHTFTYVEGELNIPWKTTWLKMPQKVQNVFRLTIGALPTSPGTITLDYTLDVSKKIEK IKSQIDFLSSCSDAGNEDKKDYQFTLYADTGWNIEPGTTKVREVRGAGRRSGPYLVSDQDDRAVIRATTIKNTVDIGGKE SGWMEIETSFTQSKIEIVPEPHTKRLDLKWGEKRIFNYPLGKWKVTLVDLENKTLEFQGPDISSSPYIKILREGTGFAIL VTPPQDIQDF >Mature_410_residues MDPILGAGTGALLNQLFNRVDQSIDRAKNAGLALEMEAGFQVRKTIEKTQVAYAEVMNQTLDRVDQTLANQINDIKNLVL DLEQKNKRTMQEIASQAQTIANTLPFHNDRPQVTSYTPSYIQRLPGDSRPIYINIKGNFEHAAEPGYQPQLTFHKQTFSP CIVTGQKLEFHVPFNTVFPTLASHTFTYVEGELNIPWKTTWLKMPQKVQNVFRLTIGALPTSPGTITLDYTLDVSKKIEK IKSQIDFLSSCSDAGNEDKKDYQFTLYADTGWNIEPGTTKVREVRGAGRRSGPYLVSDQDDRAVIRATTIKNTVDIGGKE SGWMEIETSFTQSKIEIVPEPHTKRLDLKWGEKRIFNYPLGKWKVTLVDLENKTLEFQGPDISSSPYIKILREGTGFAIL VTPPQDIQDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46248; Mature: 46248
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPILGAGTGALLNQLFNRVDQSIDRAKNAGLALEMEAGFQVRKTIEKTQVAYAEVMNQT CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH LDRVDQTLANQINDIKNLVLDLEQKNKRTMQEIASQAQTIANTLPFHNDRPQVTSYTPSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH IQRLPGDSRPIYINIKGNFEHAAEPGYQPQLTFHKQTFSPCIVTGQKLEFHVPFNTVFPT HHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCEEEEECCHHHHHHH LASHTFTYVEGELNIPWKTTWLKMPQKVQNVFRLTIGALPTSPGTITLDYTLDVSKKIEK HHCCEEEEEECEEECCEEHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEEEECHHHHHHH IKSQIDFLSSCSDAGNEDKKDYQFTLYADTGWNIEPGTTKVREVRGAGRRSGPYLVSDQD HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEECCCC DRAVIRATTIKNTVDIGGKESGWMEIETSFTQSKIEIVPEPHTKRLDLKWGEKRIFNYPL CCEEEEEEEECCHHCCCCCCCCCEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEECCC GKWKVTLVDLENKTLEFQGPDISSSPYIKILREGTGFAILVTPPQDIQDF CCEEEEEEEECCCEEEECCCCCCCCCEEEEEECCCCEEEEEECCHHCCCC >Mature Secondary Structure MDPILGAGTGALLNQLFNRVDQSIDRAKNAGLALEMEAGFQVRKTIEKTQVAYAEVMNQT CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH LDRVDQTLANQINDIKNLVLDLEQKNKRTMQEIASQAQTIANTLPFHNDRPQVTSYTPSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH IQRLPGDSRPIYINIKGNFEHAAEPGYQPQLTFHKQTFSPCIVTGQKLEFHVPFNTVFPT HHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCEEEEECCHHHHHHH LASHTFTYVEGELNIPWKTTWLKMPQKVQNVFRLTIGALPTSPGTITLDYTLDVSKKIEK HHCCEEEEEECEEECCEEHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEEEECHHHHHHH IKSQIDFLSSCSDAGNEDKKDYQFTLYADTGWNIEPGTTKVREVRGAGRRSGPYLVSDQD HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEECCCC DRAVIRATTIKNTVDIGGKESGWMEIETSFTQSKIEIVPEPHTKRLDLKWGEKRIFNYPL CCEEEEEEEECCHHCCCCCCCCCEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEECCC GKWKVTLVDLENKTLEFQGPDISSSPYIKILREGTGFAILVTPPQDIQDF CCEEEEEEEECCCEEEECCCCCCCCCEEEEEECCCCEEEEEECCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA