| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446748
Identifier: 46446748
GI number: 46446748
Start: 1333489
End: 1334451
Strand: Direct
Name: 46446748
Synonym: pc1114
Alternate gene names: NA
Gene position: 1333489-1334451 (Clockwise)
Preceding gene: 46446746
Following gene: 46446750
Centisome position: 55.23
GC content: 32.71
Gene sequence:
>963_bases ATGACAGTCCCATCTTTAATTAGTCAAACGCAAACAAATGTGCAACATGGATTACAAACTGCATATACATTTGTAAGGAA TTATACAATAATTTCTAAACAGTGGATTCAAAAGACATTCAACTCCTTGCAAACTTGGATCCAAGATGATGTGTGGCCTA AACATTTTAAGGGATGGTATGAGAGAAATATTATCGCCCTAAATAAGCATGATGTTACGTTTTTAACAACCTCTACTAGT TTAGCATTAGCAATTGCTGTGTTAATACCGCTTATATTTGGTAAAGCCATGGCGGCTCTTTCAACTATTACCGGTTTTAC ACTCTTGTTAGGGGCTTGTACCTTTGCTAAGCATCGCATTGATAAATATTACGATGAAAAAGCTTGGCACGTTGTTGAGA ATTTAAGGCATTTGGGCAATGGAACAACATGTCGAAAAAAGTATTTTATTCAAATGAAGGATGAATTAAAAAAACTTGAT GGACCGGAGTTTAGTCATCTAAAAAAAGATATCGAACAATTACGGGAAATAATGGATTGTTTTCGAGAAGCAACCTTATC TCCTTATTTTGGAGAGATTCGAAGAAGTTTTAACACTTACTTAAATCATTATCAAAATCTTTGCCAGGGAGAAGCTGATG TTAATCTTTTTACTGATTTTGCTAATGAAGCTAGGAAAATCGGCACTCCAAAACAAGATCTAGCCAATATAGATGCTAAA TTTTTGATTTTAAAAGAATTACTACGAACAAATATTGCAAAAAAAAACTTAAAAAATTTGCAAGTAGAGCTAAAAAAATT CAAAAAAGCTGCTTTAACGAATAATCATTTTGAAGAACGAAAAAACGATTTTTTAAATCATCTTTCTACTTTTCAAAAGA AAGTAGCTTCTTACAAAACACCTGTGACTTTGCCTAACTACCACCCGACTGATATCACAGATATTCAACTCAATCAAGCT TAA
Upstream 100 bases:
>100_bases TCATTTTTGTCATAAATAGGTGAACGAAAAGGACAATTTTTATCATAAATTAGAAATAAATGGTATTGGTGTTTAACAAC TTTATTATAAGAGAAAAATA
Downstream 100 bases:
>100_bases ATTGCTAGATAAAAATATGCTTTTTTTCTAAGCGAAAACATCATTTTCGCTTAGTTTCGAATTCATCATTTTCTAATCAA CACTAATTTAATTACATTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MTVPSLISQTQTNVQHGLQTAYTFVRNYTIISKQWIQKTFNSLQTWIQDDVWPKHFKGWYERNIIALNKHDVTFLTTSTS LALAIAVLIPLIFGKAMAALSTITGFTLLLGACTFAKHRIDKYYDEKAWHVVENLRHLGNGTTCRKKYFIQMKDELKKLD GPEFSHLKKDIEQLREIMDCFREATLSPYFGEIRRSFNTYLNHYQNLCQGEADVNLFTDFANEARKIGTPKQDLANIDAK FLILKELLRTNIAKKNLKNLQVELKKFKKAALTNNHFEERKNDFLNHLSTFQKKVASYKTPVTLPNYHPTDITDIQLNQA
Sequences:
>Translated_320_residues MTVPSLISQTQTNVQHGLQTAYTFVRNYTIISKQWIQKTFNSLQTWIQDDVWPKHFKGWYERNIIALNKHDVTFLTTSTS LALAIAVLIPLIFGKAMAALSTITGFTLLLGACTFAKHRIDKYYDEKAWHVVENLRHLGNGTTCRKKYFIQMKDELKKLD GPEFSHLKKDIEQLREIMDCFREATLSPYFGEIRRSFNTYLNHYQNLCQGEADVNLFTDFANEARKIGTPKQDLANIDAK FLILKELLRTNIAKKNLKNLQVELKKFKKAALTNNHFEERKNDFLNHLSTFQKKVASYKTPVTLPNYHPTDITDIQLNQA >Mature_319_residues TVPSLISQTQTNVQHGLQTAYTFVRNYTIISKQWIQKTFNSLQTWIQDDVWPKHFKGWYERNIIALNKHDVTFLTTSTSL ALAIAVLIPLIFGKAMAALSTITGFTLLLGACTFAKHRIDKYYDEKAWHVVENLRHLGNGTTCRKKYFIQMKDELKKLDG PEFSHLKKDIEQLREIMDCFREATLSPYFGEIRRSFNTYLNHYQNLCQGEADVNLFTDFANEARKIGTPKQDLANIDAKF LILKELLRTNIAKKNLKNLQVELKKFKKAALTNNHFEERKNDFLNHLSTFQKKVASYKTPVTLPNYHPTDITDIQLNQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37096; Mature: 36965
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVPSLISQTQTNVQHGLQTAYTFVRNYTIISKQWIQKTFNSLQTWIQDDVWPKHFKGWY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH ERNIIALNKHDVTFLTTSTSLALAIAVLIPLIFGKAMAALSTITGFTLLLGACTFAKHRI HCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKYYDEKAWHVVENLRHLGNGTTCRKKYFIQMKDELKKLDGPEFSHLKKDIEQLREIMDC HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH FREATLSPYFGEIRRSFNTYLNHYQNLCQGEADVNLFTDFANEARKIGTPKQDLANIDAK HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHH FLILKELLRTNIAKKNLKNLQVELKKFKKAALTNNHFEERKNDFLNHLSTFQKKVASYKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC PVTLPNYHPTDITDIQLNQA CCCCCCCCCCCCCCEEECCC >Mature Secondary Structure TVPSLISQTQTNVQHGLQTAYTFVRNYTIISKQWIQKTFNSLQTWIQDDVWPKHFKGWY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH ERNIIALNKHDVTFLTTSTSLALAIAVLIPLIFGKAMAALSTITGFTLLLGACTFAKHRI HCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKYYDEKAWHVVENLRHLGNGTTCRKKYFIQMKDELKKLDGPEFSHLKKDIEQLREIMDC HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH FREATLSPYFGEIRRSFNTYLNHYQNLCQGEADVNLFTDFANEARKIGTPKQDLANIDAK HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHH FLILKELLRTNIAKKNLKNLQVELKKFKKAALTNNHFEERKNDFLNHLSTFQKKVASYKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC PVTLPNYHPTDITDIQLNQA CCCCCCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA