| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446626
Identifier: 46446626
GI number: 46446626
Start: 1184678
End: 1186429
Strand: Direct
Name: 46446626
Synonym: pc0992
Alternate gene names: NA
Gene position: 1184678-1186429 (Clockwise)
Preceding gene: 46446625
Following gene: 46446627
Centisome position: 49.07
GC content: 39.95
Gene sequence:
>1752_bases TTGAATATTTCTAATTTTGGATTTAATCCTAGTCATCTTGTTCATACAACGACTCCATCTTACGATCCCCCTCAACAAGA CATTAACGATCAACTTGAGAATGAAAATACTCCCTTAGACAATTCTTTACCTAATCTAGAAGAAACTAGTGCACCAACAA TTCCAGCTTCCGCTCTTTCACCTTCATCTGAAGAAATTCAACTAAACTTTCACGAGGGAACTTCTCTAACTATTTCTCAT TCTCAGTTAGCTTTGTTAAGGGATAAATCCCTTTATTTTAAAACTCTTTGGTCAGGAAATTTTCAAGAAACCCTGCAACA CCCTCTCGATTTAACAAAAAAAGACTTTACGCTTTTGCTTAATTACCTAGCGAATCCTAAGTTTGAAATTCCCTTGGAAG AGATCTCTTCTTCTATTCAACTCGCCGATTATTATGGACTAACAGAAGTGGTGAAACATTTAGAAGAACAACTGATAGAT GGGTACAAATCACAAAGATTTGAACCCTTTAACTCCACTGAAGAAAGTTTAGTCAGATTAAAAGAGATTTTAAATTTCGC GCAGCAATATCAATTAAACGCTTTGAAAAACTATTTAGAATTCACCGCTGTGAGCGCCTTATTAAACCAGACCATTCAGT TAGCGGAGTTTGAAAAAATTATAAATCATTTCTCAAATGAGATAGAAGCTCTTGATTTTTCAAACAATGCCCATTTGACT GATGCCCATCTCTTAGCATTAAAAAATTGTGAAAATTTAAAAGTGCTTCATTTAGAAGCATGTCTGGCTATTACGGACGA TGGATTAGCGCATTTGGCACCCTTAGTGGCTTTGCAGCATCTAGATTTAAGCGATTGTGAGAATCTCACCGATGTTGGAT TAGCGCATTTGACACCTTTAACGGCTTTGCAGCATCTAGATCTAAGGGGGTGCTATTTCACCGATGCTGGATTAGCCCAT TTGACACCCTTAACGGCTCTGCAGCATCTAAATCTAAGCTTTTGCAGCAACGCCACTGACGCTGGATTAGCGCATTTGAC ACCTTTAACGGCTTTGCAGCATCTTGATCTAAGGGGGTGCTATCTCACCGATGCTGGATTAGCCCATTTGACACCCTTAA CGGGTTTGCAGCATCTAGATCTAATTGGCTGTAAGGATCTCACCGATGCAGGCTTGGCCCATTTGAGGCCCTTAACGGCT TTGCAGCATCTAAATCTAAACTGGTGCAGGAATCTCACCGATGCTGGATTAGCCCATTTGACACCCTTAACGGCTCTGCA GCATCTAGACCTAAGCTTTTGCAGTAACATCACTGACGATGGATTAGCCCATTTAACACTCTTAACAACTTTGCAGCATC TAAATCTAAGCGGCTGCTATAAGCTTACCGATGCAGGATTAGCCCATTTGACACTTTTAACGGGTTTGCAGCATCTAAAT CTAAACTGGTACAAGAATCTCACCGATGCAGGATTAGCTCATTTGACACCTTTAGCGGGTTTGCAATATCTAGCTCTAAC TGACTGTAAGAATCTCACCGATGCAGGATTAGCTCATTTGACACCTTTAACGGCTTTGCAGCATCTAAATCTAAGCGGCT GCTATAAGCTTACCGATGCAGGATTAGCCCATTTGACATCCTTAACGGCTTTGCAGTATCTAGATTTAAGCTACTGCATG AATCTCACGGATGATGGATTAGACCGTTTTAAAACTTTAGCAACTTCACTCAATTTAGAAATTATTAGGTAA
Upstream 100 bases:
>100_bases GCCTATTTTAACTTATTAATATTGCCATAATTTTTATCTATAAATAATATTATTAAAACATCTATAAATTAAAATTTATT TCACTCATTGGGAGGTCATT
Downstream 100 bases:
>100_bases AAAACCTTAATAAAAAAGCAGGAATTCTAACGCCGAAAGCAAAAGAGTACTTTGTCCTAAGTAGATCAAGAATAAAATTT CATTAAAGTTGATCAATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 583; Mature: 583
Protein sequence:
>583_residues MNISNFGFNPSHLVHTTTPSYDPPQQDINDQLENENTPLDNSLPNLEETSAPTIPASALSPSSEEIQLNFHEGTSLTISH SQLALLRDKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLLNYLANPKFEIPLEEISSSIQLADYYGLTEVVKHLEEQLID GYKSQRFEPFNSTEESLVRLKEILNFAQQYQLNALKNYLEFTAVSALLNQTIQLAEFEKIINHFSNEIEALDFSNNAHLT DAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAH LTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTA LQHLNLNWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHLN LNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCM NLTDDGLDRFKTLATSLNLEIIR
Sequences:
>Translated_583_residues MNISNFGFNPSHLVHTTTPSYDPPQQDINDQLENENTPLDNSLPNLEETSAPTIPASALSPSSEEIQLNFHEGTSLTISH SQLALLRDKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLLNYLANPKFEIPLEEISSSIQLADYYGLTEVVKHLEEQLID GYKSQRFEPFNSTEESLVRLKEILNFAQQYQLNALKNYLEFTAVSALLNQTIQLAEFEKIINHFSNEIEALDFSNNAHLT DAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAH LTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTA LQHLNLNWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHLN LNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCM NLTDDGLDRFKTLATSLNLEIIR >Mature_583_residues MNISNFGFNPSHLVHTTTPSYDPPQQDINDQLENENTPLDNSLPNLEETSAPTIPASALSPSSEEIQLNFHEGTSLTISH SQLALLRDKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLLNYLANPKFEIPLEEISSSIQLADYYGLTEVVKHLEEQLID GYKSQRFEPFNSTEESLVRLKEILNFAQQYQLNALKNYLEFTAVSALLNQTIQLAEFEKIINHFSNEIEALDFSNNAHLT DAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAH LTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTA LQHLNLNWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHLN LNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCM NLTDDGLDRFKTLATSLNLEIIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=335, Percent_Identity=35.2238805970149, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI27734755, Length=447, Percent_Identity=27.5167785234899, Blast_Score=114, Evalue=3e-25, Organism=Homo sapiens, GI284447308, Length=335, Percent_Identity=32.8358208955224, Blast_Score=114, Evalue=4e-25, Organism=Homo sapiens, GI161333852, Length=413, Percent_Identity=26.1501210653753, Blast_Score=109, Evalue=6e-24, Organism=Homo sapiens, GI161333854, Length=381, Percent_Identity=28.0839895013123, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI296531375, Length=437, Percent_Identity=27.2311212814645, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI6912466, Length=259, Percent_Identity=30.1158301158301, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI289666746, Length=242, Percent_Identity=35.1239669421488, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI284447314, Length=244, Percent_Identity=34.4262295081967, Blast_Score=88, Evalue=2e-17, Organism=Caenorhabditis elegans, GI25151694, Length=307, Percent_Identity=31.2703583061889, Blast_Score=94, Evalue=3e-19, Organism=Caenorhabditis elegans, GI25151696, Length=307, Percent_Identity=31.2703583061889, Blast_Score=93, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6322549, Length=375, Percent_Identity=27.2, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI17647819, Length=288, Percent_Identity=34.7222222222222, Blast_Score=129, Evalue=4e-30, Organism=Drosophila melanogaster, GI24662818, Length=276, Percent_Identity=35.1449275362319, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI161076545, Length=414, Percent_Identity=28.0193236714976, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24652783, Length=414, Percent_Identity=28.0193236714976, Blast_Score=93, Evalue=6e-19, Organism=Drosophila melanogaster, GI161076549, Length=414, Percent_Identity=28.0193236714976, Blast_Score=93, Evalue=6e-19, Organism=Drosophila melanogaster, GI161076547, Length=414, Percent_Identity=28.0193236714976, Blast_Score=92, Evalue=8e-19, Organism=Drosophila melanogaster, GI21357913, Length=338, Percent_Identity=27.810650887574, Blast_Score=89, Evalue=8e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64314; Mature: 64314
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNISNFGFNPSHLVHTTTPSYDPPQQDINDQLENENTPLDNSLPNLEETSAPTIPASALS CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCC PSSEEIQLNFHEGTSLTISHSQLALLRDKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLL CCCCEEEEEEECCCEEEEECCCEEHHHCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHH NYLANPKFEIPLEEISSSIQLADYYGLTEVVKHLEEQLIDGYKSQRFEPFNSTEESLVRL HHHCCCCEECCHHHHHCCEEHHHHCCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHH KEILNFAQQYQLNALKNYLEFTAVSALLNQTIQLAEFEKIINHFSNEIEALDFSNNAHLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEECCCCCCCC DAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCENLTDVGLAHLTPL HHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHH TALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGC HHHHHCCCCCEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCE YLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAHL EEECCCHHHHCHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHCCHHHH TPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHLN HHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHCHHHHHHHHHHHHHCC LNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTDA CHHHHCCHHCCHHHHHHHHCCHHHHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCEEHHHH GLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLATSLNLEIIR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEC >Mature Secondary Structure MNISNFGFNPSHLVHTTTPSYDPPQQDINDQLENENTPLDNSLPNLEETSAPTIPASALS CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCC PSSEEIQLNFHEGTSLTISHSQLALLRDKSLYFKTLWSGNFQETLQHPLDLTKKDFTLLL CCCCEEEEEEECCCEEEEECCCEEHHHCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHH NYLANPKFEIPLEEISSSIQLADYYGLTEVVKHLEEQLIDGYKSQRFEPFNSTEESLVRL HHHCCCCEECCHHHHHCCEEHHHHCCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHH KEILNFAQQYQLNALKNYLEFTAVSALLNQTIQLAEFEKIINHFSNEIEALDFSNNAHLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEECCCCCCCC DAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCENLTDVGLAHLTPL HHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHH TALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGC HHHHHCCCCCEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCE YLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAHL EEECCCHHHHCHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHCCHHHH TPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHLN HHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHCHHHHHHHHHHHHHCC LNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTDA CHHHHCCHHCCHHHHHHHHCCHHHHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCEEHHHH GLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLATSLNLEIIR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA