| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446594
Identifier: 46446594
GI number: 46446594
Start: 1156504
End: 1157508
Strand: Reverse
Name: 46446594
Synonym: pc0960
Alternate gene names: NA
Gene position: 1157508-1156504 (Counterclockwise)
Preceding gene: 46446597
Following gene: 46446592
Centisome position: 47.94
GC content: 31.84
Gene sequence:
>1005_bases ATGAAAGCATATATGACAAATAACCTAATTCGAACGATCAGTCATTTTAAAGAAAAAGAAGAATTTAATGCTTTTTTAGA AGCTTATAAGCAAGCAAGTGTAAACCTAGAAATTGACTCTTTTCAGCTTCATTTAAATTGGCCGTCTTTTTTAGAACTTA TCGATTTAGAGGCATTATTTTGGTCTTTCCATCCATTAAATGAAGAAGATGCTCTTTATAGCTTTTTGCTCTCCATGTTA AATAAAAATGACCAACAAGTATTGTTAACCTGCTTGTATGATCAAGTTTTTATCGATTGTTTGACAAAAGTAAAAAACCT GCCTCAAATAGATCAAACGTTTCTTCTCAATCAAATTCAAAAAAAGCGAGATCTTATTCAGGTTCCTCTTGTTAAAGAAT TATTTGCAGCTCCTTTAAATCATTATGAAAAATTATTACAAGTAGATCCTTATCATACTATTCATGATTTAACCCTCTAT TTAGCTTGGGACCGTGTATGTATCAATCTCGCTGTGATCTTTGAGCATCCTTCTTTTAAATCTGTTGACGGATTGACTAC ATTGAAAGAATGCCTTATAGAGTCTTTTCAACATATTACGAAACAAGGAGAAACAGCCCCTGGTTTTTTTCGATTCATGG AAGCTTTGTATGCTATTTTAATGCGAGAGGAAAATTTACCAATTCACTCGGAAGAAGAGTGGTTAATTCTTTGCCAAAGT GCAGAAGCCCTGAGATCGCGAGAGGTTGTTTGCGATGCTCCTTATATCGATAAAATCCTAGTTGATAAATATTCAAATTC GAAAAAGCGTGCACAATTAATTCTAACGCTCGATTCTATAGAAAAAGTAAACGCTAGTTTAAAACTTGCTGAATTTGAAA TTAAAAAATTAAATCAAGAGAAAATGGCTTGGAACTATTCTTTAGCACCAGTTGAAATTGTGTGTTTCAAACAAGAGGAT CAAAAACTTCTTTTTAATACAATTATTAGACAAGAATATTTTTAA
Upstream 100 bases:
>100_bases TAAAACATTAAAAAAAATACCGAGCGAAATTTTCTATTTTTGTTTTCATAATCTGTAGAATAAAAATAGAATGGAGTGAA TGGAAAACAACAGGGTTTTT
Downstream 100 bases:
>100_bases TTTTCATGAGTTTGATGCTCAATTAATTCTATTTTTTGTTGACGATTCATTTTTTTTATAGAAATCTCCCGTTTAGTAGC CTCAGATCGATTAAGTTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MKAYMTNNLIRTISHFKEKEEFNAFLEAYKQASVNLEIDSFQLHLNWPSFLELIDLEALFWSFHPLNEEDALYSFLLSML NKNDQQVLLTCLYDQVFIDCLTKVKNLPQIDQTFLLNQIQKKRDLIQVPLVKELFAAPLNHYEKLLQVDPYHTIHDLTLY LAWDRVCINLAVIFEHPSFKSVDGLTTLKECLIESFQHITKQGETAPGFFRFMEALYAILMREENLPIHSEEEWLILCQS AEALRSREVVCDAPYIDKILVDKYSNSKKRAQLILTLDSIEKVNASLKLAEFEIKKLNQEKMAWNYSLAPVEIVCFKQED QKLLFNTIIRQEYF
Sequences:
>Translated_334_residues MKAYMTNNLIRTISHFKEKEEFNAFLEAYKQASVNLEIDSFQLHLNWPSFLELIDLEALFWSFHPLNEEDALYSFLLSML NKNDQQVLLTCLYDQVFIDCLTKVKNLPQIDQTFLLNQIQKKRDLIQVPLVKELFAAPLNHYEKLLQVDPYHTIHDLTLY LAWDRVCINLAVIFEHPSFKSVDGLTTLKECLIESFQHITKQGETAPGFFRFMEALYAILMREENLPIHSEEEWLILCQS AEALRSREVVCDAPYIDKILVDKYSNSKKRAQLILTLDSIEKVNASLKLAEFEIKKLNQEKMAWNYSLAPVEIVCFKQED QKLLFNTIIRQEYF >Mature_334_residues MKAYMTNNLIRTISHFKEKEEFNAFLEAYKQASVNLEIDSFQLHLNWPSFLELIDLEALFWSFHPLNEEDALYSFLLSML NKNDQQVLLTCLYDQVFIDCLTKVKNLPQIDQTFLLNQIQKKRDLIQVPLVKELFAAPLNHYEKLLQVDPYHTIHDLTLY LAWDRVCINLAVIFEHPSFKSVDGLTTLKECLIESFQHITKQGETAPGFFRFMEALYAILMREENLPIHSEEEWLILCQS AEALRSREVVCDAPYIDKILVDKYSNSKKRAQLILTLDSIEKVNASLKLAEFEIKKLNQEKMAWNYSLAPVEIVCFKQED QKLLFNTIIRQEYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39244; Mature: 39244
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAYMTNNLIRTISHFKEKEEFNAFLEAYKQASVNLEIDSFQLHLNWPSFLELIDLEALF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHH WSFHPLNEEDALYSFLLSMLNKNDQQVLLTCLYDQVFIDCLTKVKNLPQIDQTFLLNQIQ HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KKRDLIQVPLVKELFAAPLNHYEKLLQVDPYHTIHDLTLYLAWDRVCINLAVIFEHPSFK HHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCC SVDGLTTLKECLIESFQHITKQGETAPGFFRFMEALYAILMREENLPIHSEEEWLILCQS CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC AEALRSREVVCDAPYIDKILVDKYSNSKKRAQLILTLDSIEKVNASLKLAEFEIKKLNQE HHHHHCCCCEECCCHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHCCHH KMAWNYSLAPVEIVCFKQEDQKLLFNTIIRQEYF HHHEECCCCCEEEEEECCCCHHHHHHHHHHHCCC >Mature Secondary Structure MKAYMTNNLIRTISHFKEKEEFNAFLEAYKQASVNLEIDSFQLHLNWPSFLELIDLEALF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHH WSFHPLNEEDALYSFLLSMLNKNDQQVLLTCLYDQVFIDCLTKVKNLPQIDQTFLLNQIQ HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KKRDLIQVPLVKELFAAPLNHYEKLLQVDPYHTIHDLTLYLAWDRVCINLAVIFEHPSFK HHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCC SVDGLTTLKECLIESFQHITKQGETAPGFFRFMEALYAILMREENLPIHSEEEWLILCQS CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC AEALRSREVVCDAPYIDKILVDKYSNSKKRAQLILTLDSIEKVNASLKLAEFEIKKLNQE HHHHHCCCCEECCCHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHCCHH KMAWNYSLAPVEIVCFKQEDQKLLFNTIIRQEYF HHHEECCCCCEEEEEECCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA