Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446580

Identifier: 46446580

GI number: 46446580

Start: 1143489

End: 1144022

Strand: Reverse

Name: 46446580

Synonym: pc0946

Alternate gene names: NA

Gene position: 1144022-1143489 (Counterclockwise)

Preceding gene: 46446581

Following gene: 46446579

Centisome position: 47.38

GC content: 36.89

Gene sequence:

>534_bases
ATGAAAAAAGTAGGGCTATTTTTTTTTCTATTTTTGTGTTTTTTCACAACATCATACAGCTTCGCACAAAATAACAAAGG
TAACCTTGACAATAAGGTAGCACAGAGAGATAACAATTACCAAAGCCAAGGTGAACAAGCTTTTTATGGTGCAAATAATT
CAGATGCTTGTGCACTTGCGGAAAGGCCAGTTGGTGATTGCTACTCTTTGTACTACAAATATGAACCATGCTACTACAAT
AAATGGCACTGCAAATATGTTCCACAATTCATTCAAAAGAAACATTGCCGTATGGTTCCCCAGTACTATGAAAAAACATG
CTGCAGATATATTCCACAATACTATTCTAAAATTTGCTGCCATCAAGTTCCTAAATACTACTATACAACAGATGGTCGCT
ATGTTCCAAAATATACTTGTGAACGTTGCTACAAACATGTCCCAAAATATTACTACAAACATACAACCAGACCAGTTCGT
GGAACTTATTGCGCGCCATCTGCCTGTGCTCTAAGACGTGAAGATGCACGTTAA

Upstream 100 bases:

>100_bases
AAACCACGTGAAAATTTAATCTTTGAGATACGCACCAGTCCTTTACAAAGGGAATAATACCAAGTGCTTAAATCAATGAT
AAACAACAAAAAGGTTTTTT

Downstream 100 bases:

>100_bases
AAATTTAGCTTTTTTGACAGGTAGATGTTTTCTACCTGTCAATATCAATTTTAAAATAATTTATGACATATTTTATGCCA
ATTTATCTCTATTACCTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALAERPVGDCYSLYYKYEPCYYN
KWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICCHQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVR
GTYCAPSACALRREDAR

Sequences:

>Translated_177_residues
MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALAERPVGDCYSLYYKYEPCYYN
KWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICCHQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVR
GTYCAPSACALRREDAR
>Mature_177_residues
MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALAERPVGDCYSLYYKYEPCYYN
KWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICCHQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVR
GTYCAPSACALRREDAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21238; Mature: 21238

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
9.0 %Cys+Met (Translated Protein)
7.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALA
CCCHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHCCCCCHHCCCEEEECCCCCCCCHHC
ERPVGDCYSLYYKYEPCYYNKWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICC
CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
HQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVRGTYCAPSACALRREDAR
HHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure
MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALA
CCCHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHCCCCCHHCCCEEEECCCCCCCCHHC
ERPVGDCYSLYYKYEPCYYNKWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICC
CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
HQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVRGTYCAPSACALRREDAR
HHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA