| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446503
Identifier: 46446503
GI number: 46446503
Start: 1051410
End: 1052369
Strand: Direct
Name: 46446503
Synonym: pc0869
Alternate gene names: NA
Gene position: 1051410-1052369 (Clockwise)
Preceding gene: 46446502
Following gene: 46446505
Centisome position: 43.55
GC content: 35.21
Gene sequence:
>960_bases ATGGATGATAATAAAGAGCAGATTCAACTTCTTCACAAATTAGAAACTCCTCAATTAAGAAAAGAAAACGCTTCTATTAT CAGTTATCATTATCAAACAGAAAAAACCAATCCAACGGTTTTTCATTTTGTATCCATTGATTTCAAATCTCCTCCCATTC GATTAAAACAAAGTCTAATCAGTCATGAATTAATTAATGAAAAAGATATCTATCTGATTGATCGCTATTTTACCGAGGAG GAAGGGGAAAGTTTACGAAATTTTTCAAAGCAAGCACATTTTAAGACGAAGATTTTTGCCGATCAAAATAGTCGATCAAA AGGGGAGACACCTGATCGTGCGATGGATCCGGAAGAAAAATGGAATTTCTTTTTAAATCCTGGACCTGCCATTCAAGAAC TTTTTAAATTGTTAAATTGGTTGGCGGATCGTTTACATGCCGATATTTCTACCCTCCCTTGGGAAATGTATGAGGCAGAC CTCTGCGTACCAGCTGTAGCTAGTAATCGAGTTGAAAGTAAAACGTTAGAAAGTATGGAGATGGGGAAACATCAAGATTA TGATACAGAGCAAGGCATTGCTTTTGGAATACCCATTTTGTATTCAGAGACTCCTAAATTTCATTTTAATATTTTTTTCA ATGGATCCGAAGGCAAGCCTTGGTTAGTTTCGGCTATGCTTTATTCCACATCGGAGGCTTTTGCTTCAGAATACGGTTTA GGGACAGTTTTTTTTGATAAAAATGATAAACAATCATTTTGTGCTGATGCTAAGCATATGCGTTTAGTCATTTTTGAGGG AGATATTGTTCATGCGATTGAACAATCTAAACTTCCTGCTCATGAAAATATTTGGAGAGTTTCTTATGTCTTTAAACTAT TGATTAATCCAAAAGACAAAAATCGCTCGATGAAACAGGCTTTTTCTGAATTGATGAATGCAGCCAGTCAGCAGAAATAA
Upstream 100 bases:
>100_bases ATTTGAATACCTGATTAACTATTGACAAGGGTGAAATTCGAGATTATGGTCAAAATTACGAGATTTTAGAAGACAGCTTA AATTTCACCGAGGAAAACAA
Downstream 100 bases:
>100_bases GTTGGATTGATTATTTAAATCCCAAATCCAATATCTATTGTTGCAGCAAAAGATCGCCATGCTGTGTGATGAGATTTTTC ATTCAAAACACTTTCATTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MDDNKEQIQLLHKLETPQLRKENASIISYHYQTEKTNPTVFHFVSIDFKSPPIRLKQSLISHELINEKDIYLIDRYFTEE EGESLRNFSKQAHFKTKIFADQNSRSKGETPDRAMDPEEKWNFFLNPGPAIQELFKLLNWLADRLHADISTLPWEMYEAD LCVPAVASNRVESKTLESMEMGKHQDYDTEQGIAFGIPILYSETPKFHFNIFFNGSEGKPWLVSAMLYSTSEAFASEYGL GTVFFDKNDKQSFCADAKHMRLVIFEGDIVHAIEQSKLPAHENIWRVSYVFKLLINPKDKNRSMKQAFSELMNAASQQK
Sequences:
>Translated_319_residues MDDNKEQIQLLHKLETPQLRKENASIISYHYQTEKTNPTVFHFVSIDFKSPPIRLKQSLISHELINEKDIYLIDRYFTEE EGESLRNFSKQAHFKTKIFADQNSRSKGETPDRAMDPEEKWNFFLNPGPAIQELFKLLNWLADRLHADISTLPWEMYEAD LCVPAVASNRVESKTLESMEMGKHQDYDTEQGIAFGIPILYSETPKFHFNIFFNGSEGKPWLVSAMLYSTSEAFASEYGL GTVFFDKNDKQSFCADAKHMRLVIFEGDIVHAIEQSKLPAHENIWRVSYVFKLLINPKDKNRSMKQAFSELMNAASQQK >Mature_319_residues MDDNKEQIQLLHKLETPQLRKENASIISYHYQTEKTNPTVFHFVSIDFKSPPIRLKQSLISHELINEKDIYLIDRYFTEE EGESLRNFSKQAHFKTKIFADQNSRSKGETPDRAMDPEEKWNFFLNPGPAIQELFKLLNWLADRLHADISTLPWEMYEAD LCVPAVASNRVESKTLESMEMGKHQDYDTEQGIAFGIPILYSETPKFHFNIFFNGSEGKPWLVSAMLYSTSEAFASEYGL GTVFFDKNDKQSFCADAKHMRLVIFEGDIVHAIEQSKLPAHENIWRVSYVFKLLINPKDKNRSMKQAFSELMNAASQQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36991; Mature: 36991
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDNKEQIQLLHKLETPQLRKENASIISYHYQTEKTNPTVFHFVSIDFKSPPIRLKQSLI CCCCHHHHHHHHHCCCCCHHCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHH SHELINEKDIYLIDRYFTEEEGESLRNFSKQAHFKTKIFADQNSRSKGETPDRAMDPEEK HHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHH WNFFLNPGPAIQELFKLLNWLADRLHADISTLPWEMYEADLCVPAVASNRVESKTLESME CCEEECCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCCHHHHCCCHHHHHHHHHH MGKHQDYDTEQGIAFGIPILYSETPKFHFNIFFNGSEGKPWLVSAMLYSTSEAFASEYGL HCCCCCCCCCCCEEECCEEEECCCCCEEEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCC GTVFFDKNDKQSFCADAKHMRLVIFEGDIVHAIEQSKLPAHENIWRVSYVFKLLINPKDK EEEEECCCCCHHHHCCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC NRSMKQAFSELMNAASQQK CCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDDNKEQIQLLHKLETPQLRKENASIISYHYQTEKTNPTVFHFVSIDFKSPPIRLKQSLI CCCCHHHHHHHHHCCCCCHHCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHH SHELINEKDIYLIDRYFTEEEGESLRNFSKQAHFKTKIFADQNSRSKGETPDRAMDPEEK HHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHH WNFFLNPGPAIQELFKLLNWLADRLHADISTLPWEMYEADLCVPAVASNRVESKTLESME CCEEECCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCCHHHHCCCHHHHHHHHHH MGKHQDYDTEQGIAFGIPILYSETPKFHFNIFFNGSEGKPWLVSAMLYSTSEAFASEYGL HCCCCCCCCCCCEEECCEEEECCCCCEEEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCC GTVFFDKNDKQSFCADAKHMRLVIFEGDIVHAIEQSKLPAHENIWRVSYVFKLLINPKDK EEEEECCCCCHHHHCCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC NRSMKQAFSELMNAASQQK CCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA