| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446502
Identifier: 46446502
GI number: 46446502
Start: 1050549
End: 1050938
Strand: Direct
Name: 46446502
Synonym: pc0868
Alternate gene names: NA
Gene position: 1050549-1050938 (Clockwise)
Preceding gene: 46446499
Following gene: 46446503
Centisome position: 43.51
GC content: 40.51
Gene sequence:
>390_bases TTGCCCGCGTCAAACGTGCCTCTTCCCATCGTGTCTTTAAAGAGCCACGCTAAGAGGGGAAAAACAACCGTCGGCTGGTG CTTTGGGTTTAAGCTCCATCTCGTGATTAATCATCATGCAGAAATTGTCGCATTTAAGTTGACAACTGGCAATATTGATG ATCGCAAACCCGTTCCAGAAATGGTAGAAGGGATGAAAGGAAAAGCATTCGCAGATAGAGGAGATATTTCAGAAAAACTG ACTCATACTCTCATGCAAAAGGGAATTCATCTTTTCACAAAAGTAAAGAAGAAGATGAAAAATAAATTGATCCCGTTAGT GGATAAACTCATGCTAAAAAAGAGGGCTATGATTGAAAGTGTGAATCATCTGTTGAAAAGTAGCCGTTAG
Upstream 100 bases:
>100_bases GTTCCTCATCTGAAGCATTTTTTCCTATGTTTTGCTTTACCTAAGAACACTAAGGGATCTGTGAAGGGATTTTATTGATA GACTCTACAGGATTAACGGT
Downstream 100 bases:
>100_bases ATAAAACATCATCGGCGCCGAAGTCGATGGAAGTTTCTTAGCAATCTAATGGCAGGTCTTGCTAGTTATTGTTTGAATCC ATCCAAGCCTCGACTGTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: Transposase IS4 Family Protein; ISPg3 Transposase; Transposase IS4 Family; Transposase And Inactivated Derivative; IS4 Family Transposase; Membrane-Associated Metal-Dependent Hydrolase; Transposase IS
Number of amino acids: Translated: 129; Mature: 128
Protein sequence:
>129_residues MPASNVPLPIVSLKSHAKRGKTTVGWCFGFKLHLVINHHAEIVAFKLTTGNIDDRKPVPEMVEGMKGKAFADRGDISEKL THTLMQKGIHLFTKVKKKMKNKLIPLVDKLMLKKRAMIESVNHLLKSSR
Sequences:
>Translated_129_residues MPASNVPLPIVSLKSHAKRGKTTVGWCFGFKLHLVINHHAEIVAFKLTTGNIDDRKPVPEMVEGMKGKAFADRGDISEKL THTLMQKGIHLFTKVKKKMKNKLIPLVDKLMLKKRAMIESVNHLLKSSR >Mature_128_residues PASNVPLPIVSLKSHAKRGKTTVGWCFGFKLHLVINHHAEIVAFKLTTGNIDDRKPVPEMVEGMKGKAFADRGDISEKLT HTLMQKGIHLFTKVKKKMKNKLIPLVDKLMLKKRAMIESVNHLLKSSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14521; Mature: 14390
Theoretical pI: Translated: 11.05; Mature: 11.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPASNVPLPIVSLKSHAKRGKTTVGWCFGFKLHLVINHHAEIVAFKLTTGNIDDRKPVPE CCCCCCCCCHHHHHHHHHCCCCEEEEEEHEEEEEEEECCCEEEEEEEEECCCCCCCCCHH MVEGMKGKAFADRGDISEKLTHTLMQKGIHLFTKVKKKMKNKLIPLVDKLMLKKRAMIES HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNHLLKSSR HHHHHHCCC >Mature Secondary Structure PASNVPLPIVSLKSHAKRGKTTVGWCFGFKLHLVINHHAEIVAFKLTTGNIDDRKPVPE CCCCCCCCHHHHHHHHHCCCCEEEEEEHEEEEEEEECCCEEEEEEEEECCCCCCCCCHH MVEGMKGKAFADRGDISEKLTHTLMQKGIHLFTKVKKKMKNKLIPLVDKLMLKKRAMIES HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNHLLKSSR HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA