| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445998
Identifier: 46445998
GI number: 46445998
Start: 489844
End: 491367
Strand: Direct
Name: 46445998
Synonym: pc0364
Alternate gene names: NA
Gene position: 489844-491367 (Clockwise)
Preceding gene: 46445997
Following gene: 46445999
Centisome position: 20.29
GC content: 32.48
Gene sequence:
>1524_bases GTGAGACTTTTTTTGTGTACAGCTCTATATTCTATTTTGATCTTTCATTTCCCTATGATAAGTCAAATTCATCAAGGCTT TGACGAGCAAATCGTTATTCATTCAGGCGAGGCTAAATATAATGGAAAAGATATTCATTTAATAGGACAAGTCACGATTC AGCACGGGCTTGGAAAAATTTCTGCTCAAATTTTGTCTATATCTCCTTCTCAATCAGATCTTAAGAAACACTTTTCATTC TTTCATATTCGTGACAATGTGTTAATTGAACTTCAGGATGGAGGAGAGATTGTTTGCCAGGAAGCAGAAATTGATTATTC TCAATTAAAGGGACATTTTAAAGGCAACACAATCTATCCTGACGTTATTTATAAAAATCATGGGGTGAAAGATCATGAAA GAGACTCTCTTATTATTAAAAGCTTGGAAATGGAAGTTGCTTTAGCTAGGATTCCAATATCAGAAAATCAAGTTTTAAAA ACTGTTGTTAAAAGTCTAGAAGCTAAGCATCACGTTCGTGCTCACTATTTAGATGATTATACTTTAATAGCTGATCGGGC TTTTTTTGAATGTTTACAAACAAATAGGTCTGAAGGAATTCTTACCTTATTTGCAAAAGAGCAGCAACCTTATTGCTTAT TGACCAATAGAAGTGGCGATCATATTCAAGCAGAAAAAATCAAGATGGTGACATTTCAAAAAAAATTGTTTTTAAATAAA CCGAAAGGAAGTCTTCACCATCAAGGAAAAAACTCATTGAGACAGAAGCTTGATTTTAGTGCTGATGAATTAGTGTGGGA TCAATCTTCGCAACGTTTGATTTTAAAAGGAAATGTAAAAGTTTATCAAGATCAAGTTTTTCAACTTGATACGAAACAAG AATTAATTATTGAACAGCAAATTTTAAATGGGCAAAAAACCCTTCGTTCGATGATCTCTCCCAAACAGACGACTTTGATA TATGACTATGATTCGCAAAAAGAGCTTTCGTATAAAATTATAAGTCCAGGAAAATTAGTTATTGATCACGAAAATTTTGT GACAACAATAGAAGGTTTAAAAGATAAAGAGGGAAATTTAGTCATAGGCGAACAAGTCTATTTTGAAAATTCTTTTGGGG ATATATATGCAGATCAAGTTTATATTTCCTACGAATGGAAAAATCAGCGACTAATCCCATCAAAAATAATTTTAACGGGT AATATTAAACTAATGAATCGCTACGATGGTTTATCTCAGGGAACAAGTTCTATTCTTCAGTATGCGATGGCAGATCAGGT AGAATATTTTCCAGATTCACATGAAATGACTCTTTTTGGAAAAAATGGGCATCGTGTTCTTTTTTTTGATAAAGTGAATA ATGTTCAAATAAGTGCCCCTGCCTTGAGAATTCGAAATAATAAGAAAAATCACAAAAATTCATTTCAAGGCATTGGAGAT GTGCGTTTTACTTTTATTGAAAAAGAGCTAAGTCAATTTAAACAGCGTTTTAGCTTAGATGATCATACAAAACAGGAGGA ATGA
Upstream 100 bases:
>100_bases AAGGAAGTGCTAAAAGAATTCAACTTTCTTTTTCTCAGAATGATCGTTCATTTACTGCCCAAGATTTGCAAGCAGCCTTC CAGGATTGGGGCGAACTATT
Downstream 100 bases:
>100_bases TGAGCCTTAATGCTTATTCCATTTGTTTAGACGTTCGGAATATTGTTAAAAAATACAATGGAAAAAGGGTTGTTAATGAA CTTTCATTTCAAGTTCTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 507; Mature: 507
Protein sequence:
>507_residues MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKISAQILSISPSQSDLKKHFSF FHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYPDVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLK TVVKSLEAKHHVRAHYLDDYTLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQILNGQKTLRSMISPKQTTLI YDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNLVIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTG NIKLMNRYDGLSQGTSSILQYAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD VRFTFIEKELSQFKQRFSLDDHTKQEE
Sequences:
>Translated_507_residues MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKISAQILSISPSQSDLKKHFSF FHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYPDVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLK TVVKSLEAKHHVRAHYLDDYTLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQILNGQKTLRSMISPKQTTLI YDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNLVIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTG NIKLMNRYDGLSQGTSSILQYAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD VRFTFIEKELSQFKQRFSLDDHTKQEE >Mature_507_residues MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKISAQILSISPSQSDLKKHFSF FHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYPDVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLK TVVKSLEAKHHVRAHYLDDYTLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQILNGQKTLRSMISPKQTTLI YDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNLVIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTG NIKLMNRYDGLSQGTSSILQYAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD VRFTFIEKELSQFKQRFSLDDHTKQEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58478; Mature: 58478
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKI CEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEEEEEHHCCCCE SAQILSISPSQSDLKKHFSFFHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYP EEEEEEECCCHHHHHHHCEEEEEECCEEEEECCCCEEEEEECCCCHHHHCCCCCCCEECC DVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLKTVVKSLEAKHHVRAHYLDDY CEEEECCCCCCCCCCCCEEEHHHEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCE TLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK EEEHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCEECCEEEEEEEEHHHHCCC PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQ CCCCCCCCCHHHHHHHCCCCHHHEEECCCCCEEEEECCCEEEECCEEEECCHHHHHHHHH ILNGQKTLRSMISPKQTTLIYDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNL HHCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEEECCCCEEEECCCCCCCCCE VIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTGNIKLMNRYDGLSQGTSSILQ EEEEEEEEECCCCCEEEEEEEEEEEECCCEECCEEEEEECCEEEEECCCCCCHHHHHHHH YAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD HHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCEEEECCEEEECCCCCCCCHHCCCCCC VRFTFIEKELSQFKQRFSLDDHTKQEE CHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKI CEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEEEEEHHCCCCE SAQILSISPSQSDLKKHFSFFHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYP EEEEEEECCCHHHHHHHCEEEEEECCEEEEECCCCEEEEEECCCCHHHHCCCCCCCEECC DVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLKTVVKSLEAKHHVRAHYLDDY CEEEECCCCCCCCCCCCEEEHHHEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCE TLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK EEEHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCEECCEEEEEEEEHHHHCCC PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQ CCCCCCCCCHHHHHHHCCCCHHHEEECCCCCEEEEECCCEEEECCEEEECCHHHHHHHHH ILNGQKTLRSMISPKQTTLIYDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNL HHCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEEECCCCEEEECCCCCCCCCE VIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTGNIKLMNRYDGLSQGTSSILQ EEEEEEEEECCCCCEEEEEEEEEEEECCCEECCEEEEEECCEEEEECCCCCCHHHHHHHH YAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD HHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCEEEECCEEEECCCCCCCCHHCCCCCC VRFTFIEKELSQFKQRFSLDDHTKQEE CHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA