| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445838
Identifier: 46445838
GI number: 46445838
Start: 298593
End: 299438
Strand: Reverse
Name: 46445838
Synonym: pc0204
Alternate gene names: NA
Gene position: 299438-298593 (Counterclockwise)
Preceding gene: 46445839
Following gene: 46445837
Centisome position: 12.4
GC content: 34.99
Gene sequence:
>846_bases ATGGATAAAAGAGGCTGGATGATGATGCGTATTTTCATCAACCGATACCATCTCAAAGGGGGAGAGATATTATTAAAATA TCTTTCCACAGAAGAAGCTCAGGCTTTGCAAAGTCAAACAATTCGTTCTACTGATTTAAGCCCTCTTCTTTATCAACCTC AAAATTTGTTGAGAAGAATGCATTATTCATGGATTGCTCCCCTTCTTGAAAATTTTCCTGAACGTCTCTATCCTTTAGTT AAAGCAGCTTTAACAAGTGAACAAGCGTCAGGCCTCCAAAACGCGCAATCACTTACCCTATCAAAACCCGTTAAAACATT TATCATCAATCAACTTTATAGCTTTTTAAAAGCTGATGAGCGTCTCCCCTATGATTATCTCCCTGAGACAGATTTATCAG AGCTTGGAACCTGGAATAAAGATAAATTGACACTTTTAATTGATTTTTTGGGCTTACATGATCTTGCCGTCGAAGTTCGA CATATAGTAGATAAAAATCATCTAAAAAATATTTATGCCTGTTTGACCCCAAAACAATTCTATTATCTAAAAGTTTGTTT ACATCAGAAAGAAGTTTTATCGGTTCCTAAACTTGGCATAGACCCTTCTCTGAAAGATTGTACTAAACTTAAACGTATTA TCCATCAAAGAGGTCTTTTCCGTTTAAGCAAAGCTTTATGTGGGCAACATCCTGATTTTATTTGGTATCTTGCTCATACC TTGGATACGGGTAGAGGAAAGCTTATCTTGAATGCTTATCAAAAAGAAAGTATTGATAAGGTTACTCCTTTTTTAAAAGG ACAAGTCATCAATCTTATGAATTTTTTTAAAAGTGAGTCCATGTGA
Upstream 100 bases:
>100_bases AACAAAAAAATGAGCAATCTAATAAAAAAGAGACAGAAGATAACACCCTAAATCAAGGAGTTGATGAAACCTAAGCGTTT CATTGATTAAAAGGATTGTT
Downstream 100 bases:
>100_bases GTAAAAAGTTTTTCACCTTAATTTATGGGGAACAGATTCACGCAGCCCCCAAAACAAAGATTATCCCAAGCGAATCTTTT TCTAAACTTGCGGATGCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MDKRGWMMMRIFINRYHLKGGEILLKYLSTEEAQALQSQTIRSTDLSPLLYQPQNLLRRMHYSWIAPLLENFPERLYPLV KAALTSEQASGLQNAQSLTLSKPVKTFIINQLYSFLKADERLPYDYLPETDLSELGTWNKDKLTLLIDFLGLHDLAVEVR HIVDKNHLKNIYACLTPKQFYYLKVCLHQKEVLSVPKLGIDPSLKDCTKLKRIIHQRGLFRLSKALCGQHPDFIWYLAHT LDTGRGKLILNAYQKESIDKVTPFLKGQVINLMNFFKSESM
Sequences:
>Translated_281_residues MDKRGWMMMRIFINRYHLKGGEILLKYLSTEEAQALQSQTIRSTDLSPLLYQPQNLLRRMHYSWIAPLLENFPERLYPLV KAALTSEQASGLQNAQSLTLSKPVKTFIINQLYSFLKADERLPYDYLPETDLSELGTWNKDKLTLLIDFLGLHDLAVEVR HIVDKNHLKNIYACLTPKQFYYLKVCLHQKEVLSVPKLGIDPSLKDCTKLKRIIHQRGLFRLSKALCGQHPDFIWYLAHT LDTGRGKLILNAYQKESIDKVTPFLKGQVINLMNFFKSESM >Mature_281_residues MDKRGWMMMRIFINRYHLKGGEILLKYLSTEEAQALQSQTIRSTDLSPLLYQPQNLLRRMHYSWIAPLLENFPERLYPLV KAALTSEQASGLQNAQSLTLSKPVKTFIINQLYSFLKADERLPYDYLPETDLSELGTWNKDKLTLLIDFLGLHDLAVEVR HIVDKNHLKNIYACLTPKQFYYLKVCLHQKEVLSVPKLGIDPSLKDCTKLKRIIHQRGLFRLSKALCGQHPDFIWYLAHT LDTGRGKLILNAYQKESIDKVTPFLKGQVINLMNFFKSESM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32643; Mature: 32643
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKRGWMMMRIFINRYHLKGGEILLKYLSTEEAQALQSQTIRSTDLSPLLYQPQNLLRRM CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHH HYSWIAPLLENFPERLYPLVKAALTSEQASGLQNAQSLTLSKPVKTFIINQLYSFLKADE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RLPYDYLPETDLSELGTWNKDKLTLLIDFLGLHDLAVEVRHIVDKNHLKNIYACLTPKQF CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH YYLKVCLHQKEVLSVPKLGIDPSLKDCTKLKRIIHQRGLFRLSKALCGQHPDFIWYLAHT HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LDTGRGKLILNAYQKESIDKVTPFLKGQVINLMNFFKSESM HCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDKRGWMMMRIFINRYHLKGGEILLKYLSTEEAQALQSQTIRSTDLSPLLYQPQNLLRRM CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHH HYSWIAPLLENFPERLYPLVKAALTSEQASGLQNAQSLTLSKPVKTFIINQLYSFLKADE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RLPYDYLPETDLSELGTWNKDKLTLLIDFLGLHDLAVEVRHIVDKNHLKNIYACLTPKQF CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH YYLKVCLHQKEVLSVPKLGIDPSLKDCTKLKRIIHQRGLFRLSKALCGQHPDFIWYLAHT HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LDTGRGKLILNAYQKESIDKVTPFLKGQVINLMNFFKSESM HCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA