| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445750
Identifier: 46445750
GI number: 46445750
Start: 183508
End: 185280
Strand: Reverse
Name: 46445750
Synonym: pc0116
Alternate gene names: NA
Gene position: 185280-183508 (Counterclockwise)
Preceding gene: 46445751
Following gene: 46445749
Centisome position: 7.67
GC content: 33.62
Gene sequence:
>1773_bases ATGATCAACCCCAAAAAGGTCAATCTTCTAAAGAGAGACATTCATGGTAAAAAAATGATCAAAGCTTTATGCATTTATTT TCTTTCCTTTATGTCAACTTTATCAGCCGTAAACATAAAGGTTGAGGCTTCTATTGATTCTCAAAACAATCAAGAAAATC ATCCCCTTTCAGGAATAATTAGTATTACTCATCAAATTCAAGACGAAATTGATTCTAATTCATTTCAAATAGAGGGAAAG CCTCTTTCAGTTACTTTTATTAAAAATGTAAATGTTTCTGAAGAATTACCCAAAACTATTGTATCTTTTTATCATTTCAC TCTTTCTCCGCAAGCTAAAGGACTGTATGTTTTACCTCCTATTTCAGTTAAAATAAGAGATAAAATTCAAAGTAGCCCAC CCAGTTCTTATGAAGTGAAAGAGCTGAAAAGTTCACTTTTAAACCCAAAAAATTCTAAATTTTCCTCTGCTTCTATACAA TTAAAACGTTCCTCTGCTTCTAATGCTTTGATTTTCAAATTAGAGGCAAGTATTAAAGGCCCTACTTTACTGTATCCAGG CCAACGTACCAATTTATTTTACCGCATTTCTTATAATCAAAGTGTTGAATTAACAGAGTCTCTTCTTCCTTTCATTCATG CTGACGCCTTTAAAAAAATTGGGGATGCACATATTAGAGACTTTCAAAATGGTGAGATCACAGTGCAAGAAATTTCTCAA GAAGTGGAAGCAAACCAAATAGGAAGTTTTAAGTTAGGGCCTTCTTCAATTTCGGGTTATAGTTACCAAACTAATTTTTT CGGTAAGAAAAATTATCAACAGCCACTCCTCAAAGCGGAGGCTCCAGCTGTCTACTTGCAAGTAAAGCCCTTTCCTTTGG AAAACAAACCCTATTCTTTTAATGGAGCATTGGGTGTCGTTGATGTTAAAATCAAAATGAGAACATCTTCTGAAAGACAA TTAGAAGATAAAATTTTGATAGATATGTATATTTCTGGCGTCGAAAATCTAGAAGATTTTCGACTCCCAGATTTTTATTG TCAGCCTGGATTTAGTGGTTTTTTTCAATTCAATGACCTCCCTCTGACAGGAGAAATAAAAGAATCTTCAAAATATTTTC AAATCGAACTTATTCCCGTTTCTACATTTATTAATACGATTCCTTCTTTTGAAATTTCCTCTTTCGATCCTGTAACGAGC CGCTATATCCTTAAAAGAACGGATCCTATTCCTATTGATCTTAAAACAATGCCAATGGCACCTTATCCCACAATTTCTTT GGAAAAAGAAAATGAAATCCCCAACGAAAAAATTCTGTGGAATTCTTCTTCATGGCCACTTAGCCCTCTTGAAATCAAAG ATTCACAAAATTTGCCTAGATTGAGCCATAATTGGACGCAAACTCCATGGATTTTATTAGTAATTCCTTTGGGAATCAGT TGGCTAACCCTTCAATCATATTGGAAAAAATTATGGGATTTAAAGCCTAAAAAAATCAAAAAGCAAAGTTTAATTCTTTT AGAGCAAGCTTTAAAAATCAAAAAAAACTCGGAAAAAGAAATCTTGCAGTTGCTTGAAAAAGCTACTTGGTGGAAAGTAT GGGAAGAAGGCATTCTCCCTATAAAAGTTACTTCTTTAGAAGATCTTTCTACTCAAGGGAAAGCCGGAAAAATGAGACAG TTTATTTACCAGTTGCAGTCTTTACAGTATGGCCCAAGTACAGGGATGGAAATAGCTGATATTAAAGTACAAGCCCAAAA ATTATTAAGTTAA
Upstream 100 bases:
>100_bases AGCCCTAATCCTAATCCAGATCCTTCTCATTCCAATAGTAAGCCAAAAACAAGTCAAGACATTCAAGAAACCCTTCGACT TCTCCAAGAAATGCAATCAA
Downstream 100 bases:
>100_bases GCTTTGAATTCATTTATTTTAAATTGAGATGATAAGGACAAAAATGACAGATCCTCAACCTTCTGTAGATGAACGAATCC TTCTCGCTCAGGAAAGGACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 590; Mature: 590
Protein sequence:
>590_residues MINPKKVNLLKRDIHGKKMIKALCIYFLSFMSTLSAVNIKVEASIDSQNNQENHPLSGIISITHQIQDEIDSNSFQIEGK PLSVTFIKNVNVSEELPKTIVSFYHFTLSPQAKGLYVLPPISVKIRDKIQSSPPSSYEVKELKSSLLNPKNSKFSSASIQ LKRSSASNALIFKLEASIKGPTLLYPGQRTNLFYRISYNQSVELTESLLPFIHADAFKKIGDAHIRDFQNGEITVQEISQ EVEANQIGSFKLGPSSISGYSYQTNFFGKKNYQQPLLKAEAPAVYLQVKPFPLENKPYSFNGALGVVDVKIKMRTSSERQ LEDKILIDMYISGVENLEDFRLPDFYCQPGFSGFFQFNDLPLTGEIKESSKYFQIELIPVSTFINTIPSFEISSFDPVTS RYILKRTDPIPIDLKTMPMAPYPTISLEKENEIPNEKILWNSSSWPLSPLEIKDSQNLPRLSHNWTQTPWILLVIPLGIS WLTLQSYWKKLWDLKPKKIKKQSLILLEQALKIKKNSEKEILQLLEKATWWKVWEEGILPIKVTSLEDLSTQGKAGKMRQ FIYQLQSLQYGPSTGMEIADIKVQAQKLLS
Sequences:
>Translated_590_residues MINPKKVNLLKRDIHGKKMIKALCIYFLSFMSTLSAVNIKVEASIDSQNNQENHPLSGIISITHQIQDEIDSNSFQIEGK PLSVTFIKNVNVSEELPKTIVSFYHFTLSPQAKGLYVLPPISVKIRDKIQSSPPSSYEVKELKSSLLNPKNSKFSSASIQ LKRSSASNALIFKLEASIKGPTLLYPGQRTNLFYRISYNQSVELTESLLPFIHADAFKKIGDAHIRDFQNGEITVQEISQ EVEANQIGSFKLGPSSISGYSYQTNFFGKKNYQQPLLKAEAPAVYLQVKPFPLENKPYSFNGALGVVDVKIKMRTSSERQ LEDKILIDMYISGVENLEDFRLPDFYCQPGFSGFFQFNDLPLTGEIKESSKYFQIELIPVSTFINTIPSFEISSFDPVTS RYILKRTDPIPIDLKTMPMAPYPTISLEKENEIPNEKILWNSSSWPLSPLEIKDSQNLPRLSHNWTQTPWILLVIPLGIS WLTLQSYWKKLWDLKPKKIKKQSLILLEQALKIKKNSEKEILQLLEKATWWKVWEEGILPIKVTSLEDLSTQGKAGKMRQ FIYQLQSLQYGPSTGMEIADIKVQAQKLLS >Mature_590_residues MINPKKVNLLKRDIHGKKMIKALCIYFLSFMSTLSAVNIKVEASIDSQNNQENHPLSGIISITHQIQDEIDSNSFQIEGK PLSVTFIKNVNVSEELPKTIVSFYHFTLSPQAKGLYVLPPISVKIRDKIQSSPPSSYEVKELKSSLLNPKNSKFSSASIQ LKRSSASNALIFKLEASIKGPTLLYPGQRTNLFYRISYNQSVELTESLLPFIHADAFKKIGDAHIRDFQNGEITVQEISQ EVEANQIGSFKLGPSSISGYSYQTNFFGKKNYQQPLLKAEAPAVYLQVKPFPLENKPYSFNGALGVVDVKIKMRTSSERQ LEDKILIDMYISGVENLEDFRLPDFYCQPGFSGFFQFNDLPLTGEIKESSKYFQIELIPVSTFINTIPSFEISSFDPVTS RYILKRTDPIPIDLKTMPMAPYPTISLEKENEIPNEKILWNSSSWPLSPLEIKDSQNLPRLSHNWTQTPWILLVIPLGIS WLTLQSYWKKLWDLKPKKIKKQSLILLEQALKIKKNSEKEILQLLEKATWWKVWEEGILPIKVTSLEDLSTQGKAGKMRQ FIYQLQSLQYGPSTGMEIADIKVQAQKLLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67129; Mature: 67129
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINPKKVNLLKRDIHGKKMIKALCIYFLSFMSTLSAVNIKVEASIDSQNNQENHPLSGII CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHH SITHQIQDEIDSNSFQIEGKPLSVTFIKNVNVSEELPKTIVSFYHFTLSPQAKGLYVLPP HHHHHHHHHCCCCCEEEECCEEEEEEEECCCCHHHHHHHHHHHHHEEECCCCCCEEEECC ISVKIRDKIQSSPPSSYEVKELKSSLLNPKNSKFSSASIQLKRSSASNALIFKLEASIKG CCEEEHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCC PTLLYPGQRTNLFYRISYNQSVELTESLLPFIHADAFKKIGDAHIRDFQNGEITVQEISQ CEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEHHHHHH EVEANQIGSFKLGPSSISGYSYQTNFFGKKNYQQPLLKAEAPAVYLQVKPFPLENKPYSF HHHHHHCCCEEECCCCCCCCEEEECCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCC NGALGVVDVKIKMRTSSERQLEDKILIDMYISGVENLEDFRLPDFYCQPGFSGFFQFNDL CCEEEEEEEEEEEECCCCHHHHHHEEEEHHHHCCCCHHHCCCCCCEECCCCCCEEEECCC PLTGEIKESSKYFQIELIPVSTFINTIPSFEISSFDPVTSRYILKRTDPIPIDLKTMPMA CCCCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCHHHHHEEECCCCCCEEEEECCCC PYPTISLEKENEIPNEKILWNSSSWPLSPLEIKDSQNLPRLSHNWTQTPWILLVIPLGIS CCCEEEECCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCH WLTLQSYWKKLWDLKPKKIKKQSLILLEQALKIKKNSEKEILQLLEKATWWKVWEEGILP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCE IKVTSLEDLSTQGKAGKMRQFIYQLQSLQYGPSTGMEIADIKVQAQKLLS EEEECHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCC >Mature Secondary Structure MINPKKVNLLKRDIHGKKMIKALCIYFLSFMSTLSAVNIKVEASIDSQNNQENHPLSGII CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHH SITHQIQDEIDSNSFQIEGKPLSVTFIKNVNVSEELPKTIVSFYHFTLSPQAKGLYVLPP HHHHHHHHHCCCCCEEEECCEEEEEEEECCCCHHHHHHHHHHHHHEEECCCCCCEEEECC ISVKIRDKIQSSPPSSYEVKELKSSLLNPKNSKFSSASIQLKRSSASNALIFKLEASIKG CCEEEHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCC PTLLYPGQRTNLFYRISYNQSVELTESLLPFIHADAFKKIGDAHIRDFQNGEITVQEISQ CEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEHHHHHH EVEANQIGSFKLGPSSISGYSYQTNFFGKKNYQQPLLKAEAPAVYLQVKPFPLENKPYSF HHHHHHCCCEEECCCCCCCCEEEECCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCC NGALGVVDVKIKMRTSSERQLEDKILIDMYISGVENLEDFRLPDFYCQPGFSGFFQFNDL CCEEEEEEEEEEEECCCCHHHHHHEEEEHHHHCCCCHHHCCCCCCEECCCCCCEEEECCC PLTGEIKESSKYFQIELIPVSTFINTIPSFEISSFDPVTSRYILKRTDPIPIDLKTMPMA CCCCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCHHHHHEEECCCCCCEEEEECCCC PYPTISLEKENEIPNEKILWNSSSWPLSPLEIKDSQNLPRLSHNWTQTPWILLVIPLGIS CCCEEEECCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCH WLTLQSYWKKLWDLKPKKIKKQSLILLEQALKIKKNSEKEILQLLEKATWWKVWEEGILP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCE IKVTSLEDLSTQGKAGKMRQFIYQLQSLQYGPSTGMEIADIKVQAQKLLS EEEECHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA