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The map label for this gene is prt1 [H]

Identifier: 46445671

GI number: 46445671

Start: 56119

End: 57060

Strand: Direct

Name: prt1 [H]

Synonym: pc0037

Alternate gene names: 46445671

Gene position: 56119-57060 (Clockwise)

Preceding gene: 46445669

Following gene: 46445673

Centisome position: 2.32

GC content: 33.97

Gene sequence:

>942_bases
ATGAACTTTTCAGAGTTTCCTTTTAGGCAAAATTATTCTTCTAATCCACCACGACGACCTTATTCAAATCCTAATAGCAT
GGAACAAATAAAATCTCATTACGGAATAGAATGGGATTATCCTGAGCCGAATATTAAAATTTACACCATGTATTATGGGC
GAGAAGTTTGTAAAAATAATCAAGGTGCAACTTCCATAGATCCTGTCGCTGCAAAACTTTATAGCACCGTAAAGAAAGTT
TACGAATTTTTTGAGGATGTTTTTGGATTAAGAGGAATTGAGGGTCAAGGTACTATTACTGATCTTTACATCAATTGGCA
AGAAAAGAATGCTTTGTGGAGTTGCCCTACTTTAAATATCAATGAGATAAGTTGGTTTAATTTTAATGATAACTTTGCAG
TAACAGAAGAAGTTGTTGCTCATGAATACTTTCACGCCGTTATTTACAACAAACTTAATTATCAGGGACAATCAGGTGCA
TTGAATGAATCGTTAGCAGATGTATTTGGAATCGCTTTTAAACACTGGTTGATCGATGAAAAAAATTTACAAAGTTCTAA
AACATGGTGGATTGGAAGCCTTCGCGATTTATCTATTCCATCTAAAATACCCCGAAATTACAAAGTAAACCTTAATGAAC
ATAATTTTCCTATATATGTAAAAGAAAATGATTATGGCTATGTACATAATAATAGCTGTATTCCAAGTTATGCTTTTTAT
CTAGCAAACCAATTAGAAGGTGGTAGAACATGGGGGATCATTGCTCAAATTTGGTTTAAAGCTGCTCAGGACACGACACT
AAAAAGCGATGAAACTTTTGCATCATTTGCTCACAGAACTATAAGGAAAGCTAGTGAATTTGGTATGTCACGTATAATTT
TTCAAGCCTGGTCAGCTGTAGGTGTTTTATTCACACCACAAATACCAATGATGAGTTCGTAA

Upstream 100 bases:

>100_bases
ATTTTTTAAAAAATAACATATATGCAAGTTTAATAAAAATAATTCATTAAAATATAGTTCCATTTTATAAAAATAATTAT
AAAATGGTGGAGTAATACAT

Downstream 100 bases:

>100_bases
GTTTTAAAATATTTAATTTCAAATTCGTATAATTGAGCATTATTTTTATTAAAATAAGAATTCCATTAGTAGATATGTAA
CACCAATACAAGAAAAAAAT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNFSEFPFRQNYSSNPPRRPYSNPNSMEQIKSHYGIEWDYPEPNIKIYTMYYGREVCKNNQGATSIDPVAAKLYSTVKKV
YEFFEDVFGLRGIEGQGTITDLYINWQEKNALWSCPTLNINEISWFNFNDNFAVTEEVVAHEYFHAVIYNKLNYQGQSGA
LNESLADVFGIAFKHWLIDEKNLQSSKTWWIGSLRDLSIPSKIPRNYKVNLNEHNFPIYVKENDYGYVHNNSCIPSYAFY
LANQLEGGRTWGIIAQIWFKAAQDTTLKSDETFASFAHRTIRKASEFGMSRIIFQAWSAVGVLFTPQIPMMSS

Sequences:

>Translated_313_residues
MNFSEFPFRQNYSSNPPRRPYSNPNSMEQIKSHYGIEWDYPEPNIKIYTMYYGREVCKNNQGATSIDPVAAKLYSTVKKV
YEFFEDVFGLRGIEGQGTITDLYINWQEKNALWSCPTLNINEISWFNFNDNFAVTEEVVAHEYFHAVIYNKLNYQGQSGA
LNESLADVFGIAFKHWLIDEKNLQSSKTWWIGSLRDLSIPSKIPRNYKVNLNEHNFPIYVKENDYGYVHNNSCIPSYAFY
LANQLEGGRTWGIIAQIWFKAAQDTTLKSDETFASFAHRTIRKASEFGMSRIIFQAWSAVGVLFTPQIPMMSS
>Mature_313_residues
MNFSEFPFRQNYSSNPPRRPYSNPNSMEQIKSHYGIEWDYPEPNIKIYTMYYGREVCKNNQGATSIDPVAAKLYSTVKKV
YEFFEDVFGLRGIEGQGTITDLYINWQEKNALWSCPTLNINEISWFNFNDNFAVTEEVVAHEYFHAVIYNKLNYQGQSGA
LNESLADVFGIAFKHWLIDEKNLQSSKTWWIGSLRDLSIPSKIPRNYKVNLNEHNFPIYVKENDYGYVHNNSCIPSYAFY
LANQLEGGRTWGIIAQIWFKAAQDTTLKSDETFASFAHRTIRKASEFGMSRIIFQAWSAVGVLFTPQIPMMSS

Specific function: Unknown

COG id: COG3227

COG function: function code E; Zinc metalloprotease (elastase)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013856
- InterPro:   IPR001570 [H]

Pfam domain/function: PF01447 Peptidase_M4; PF02868 Peptidase_M4_C [H]

EC number: NA

Molecular weight: Translated: 36240; Mature: 36240

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFSEFPFRQNYSSNPPRRPYSNPNSMEQIKSHYGIEWDYPEPNIKIYTMYYGREVCKNN
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCEEEEEEEECHHHHCCC
QGATSIDPVAAKLYSTVKKVYEFFEDVFGLRGIEGQGTITDLYINWQEKNALWSCPTLNI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEECCCCCC
NEISWFNFNDNFAVTEEVVAHEYFHAVIYNKLNYQGQSGALNESLADVFGIAFKHWLIDE
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
KNLQSSKTWWIGSLRDLSIPSKIPRNYKVNLNEHNFPIYVKENDYGYVHNNSCIPSYAFY
CCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEECCCCCHHHHHH
LANQLEGGRTWGIIAQIWFKAAQDTTLKSDETFASFAHRTIRKASEFGMSRIIFQAWSAV
HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVLFTPQIPMMSS
CEEECCCCCCCCC
>Mature Secondary Structure
MNFSEFPFRQNYSSNPPRRPYSNPNSMEQIKSHYGIEWDYPEPNIKIYTMYYGREVCKNN
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCEEEEEEEECHHHHCCC
QGATSIDPVAAKLYSTVKKVYEFFEDVFGLRGIEGQGTITDLYINWQEKNALWSCPTLNI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEECCCCCC
NEISWFNFNDNFAVTEEVVAHEYFHAVIYNKLNYQGQSGALNESLADVFGIAFKHWLIDE
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
KNLQSSKTWWIGSLRDLSIPSKIPRNYKVNLNEHNFPIYVKENDYGYVHNNSCIPSYAFY
CCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEECCCCCHHHHHH
LANQLEGGRTWGIIAQIWFKAAQDTTLKSDETFASFAHRTIRKASEFGMSRIIFQAWSAV
HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVLFTPQIPMMSS
CEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1917878 [H]