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The map label for this gene is ymdB [C]

Identifier: 45659116

GI number: 45659116

Start: 4040189

End: 4040716

Strand: Direct

Name: ymdB [C]

Synonym: LIC13295

Alternate gene names: 45659116

Gene position: 4040189-4040716 (Clockwise)

Preceding gene: 45659115

Following gene: 45659118

Centisome position: 94.46

GC content: 32.58

Gene sequence:

>528_bases
GTGAATAATAAAATTAAATTAATCAAAGAAGATATCACCCAACTCGAAGTAGACGCGATCGTAAACGCGGCCAATAGTTC
TTTGTTAGGTGGTGGTGGAGTTGATGGTGCAATTCATAGAGCAGGTGGACCGGAAATTTTAGAAGAATGTTATAAAATCC
GAGAAAAACAAGGAGAATGCAAAGTCGGAGAAGCAGTTATTACAACCGCTGGAAGATTAAATGCAAAATTTATAATTCAT
ACGGTTGGACCTATTTGGAGCGGTGGAAATAAAAACGAAGATGAACTACTTTCTAACGCTTATAAAAATAGTCTTCTTTT
AGCAAAAAATCATTCTTTAAAAACAATCGCATTTCCAAATATCAGCACAGGTATTTATCATTTTCCCAAAGAACGCGCCG
CAAAGATTGCAATTCAAAGTGTTACGAAATTTCTAAAACAAGACAATCAAATCCAAACTGTATTTTTTGTTTGTTTTGAT
TTTGAAAATTTAGAAATTTATAATAAACTACTTCAAACATACAAATAA

Upstream 100 bases:

>100_bases
AGTCCCAAAGTTATATTTTTAAAATTCTGATTCTTTTAAGATTTTACAGAAGCTTGGAACAAATTCTCTATAAAAGAAAA
CATAGAATTAATTTTTAAAA

Downstream 100 bases:

>100_bases
TTTGGAGAATAGGTTTCTTACGAAAAAGCAAAGAAAAAATTCATTTTTTATAAAATAATATTTTAACGTGAGTTCGATAT
AAGAAACCCATGGTTCTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MNNKIKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGEAVITTAGRLNAKFIIH
TVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPNISTGIYHFPKERAAKIAIQSVTKFLKQDNQIQTVFFVCFD
FENLEIYNKLLQTYK

Sequences:

>Translated_175_residues
MNNKIKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGEAVITTAGRLNAKFIIH
TVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPNISTGIYHFPKERAAKIAIQSVTKFLKQDNQIQTVFFVCFD
FENLEIYNKLLQTYK
>Mature_175_residues
MNNKIKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGEAVITTAGRLNAKFIIH
TVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPNISTGIYHFPKERAAKIAIQSVTKFLKQDNQIQTVFFVCFD
FENLEIYNKLLQTYK

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI13569840, Length=176, Percent_Identity=47.1590909090909, Blast_Score=155, Evalue=2e-38,
Organism=Homo sapiens, GI117968621, Length=176, Percent_Identity=47.7272727272727, Blast_Score=153, Evalue=8e-38,
Organism=Homo sapiens, GI20336746, Length=169, Percent_Identity=36.094674556213, Blast_Score=118, Evalue=2e-27,
Organism=Homo sapiens, GI93141018, Length=172, Percent_Identity=36.046511627907, Blast_Score=109, Evalue=1e-24,
Organism=Homo sapiens, GI93141020, Length=172, Percent_Identity=36.046511627907, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI4758496, Length=172, Percent_Identity=36.046511627907, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI154813199, Length=167, Percent_Identity=32.3353293413174, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI226371718, Length=141, Percent_Identity=39.7163120567376, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI226371710, Length=141, Percent_Identity=39.7163120567376, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI226371706, Length=141, Percent_Identity=39.7163120567376, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI226371716, Length=141, Percent_Identity=39.7163120567376, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI226371714, Length=141, Percent_Identity=39.7163120567376, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI226371712, Length=141, Percent_Identity=39.7163120567376, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI207450721, Length=176, Percent_Identity=35.7954545454545, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI8923143, Length=176, Percent_Identity=35.7954545454545, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI8923920, Length=172, Percent_Identity=31.3953488372093, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI165377137, Length=160, Percent_Identity=31.25, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787283, Length=171, Percent_Identity=53.8011695906433, Blast_Score=212, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI17538214, Length=175, Percent_Identity=46.2857142857143, Blast_Score=130, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24586353, Length=148, Percent_Identity=33.7837837837838, Blast_Score=81, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3295_LEPIC (Q72M93)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_003202.1
- ProteinModelPortal:   Q72M93
- SMR:   Q72M93
- GeneID:   2770525
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC13295
- NMPDR:   fig|267671.1.peg.3202
- HOGENOM:   HBG682503
- OMA:   ARHVIHT
- ProtClustDB:   CLSK814231
- BioCyc:   LINT267671:LIC_13295-MONOMER
- HAMAP:   MF_01205_B
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 19383; Mature: 19383

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKIKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGEC
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCC
KVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPN
CCCHHHEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEECCCCEEEEECCC
ISTGIYHFPKERAAKIAIQSVTKFLKQDNQIQTVFFVCFDFENLEIYNKLLQTYK
CCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHCC
>Mature Secondary Structure
MNNKIKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGEC
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCC
KVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPN
CCCHHHEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEECCCCEEEEECCC
ISTGIYHFPKERAAKIAIQSVTKFLKQDNQIQTVFFVCFDFENLEIYNKLLQTYK
CCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA