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The map label for this gene is yijO [C]

Identifier: 45658948

GI number: 45658948

Start: 3825437

End: 3826597

Strand: Direct

Name: yijO [C]

Synonym: LIC13126

Alternate gene names: 45658948

Gene position: 3825437-3826597 (Clockwise)

Preceding gene: 45658946

Following gene: 45658951

Centisome position: 89.44

GC content: 33.16

Gene sequence:

>1161_bases
TTGGATGTGCAAGAAGTTGAATATTATTCTTTAGCAGCAACATTGTATTTTATGATTGCTGCATTTGGGATTTTGAAAAG
AAACAAACAAAAAAATATCGGTACTCCGGTGCTGTTTTTTTTGATGGCTTGTGTTTTTTGGTCTTTTACGGCTACGATTT
TTATCTCGGAAAACGTTCTCGCAAAGAAGTTAGCTCAATATTTTTATGCTTATTTTTCAATGGCGATTGCTTTCTTTTTT
ATGAATTTTGTGATAAATACGAAAAAAAATAATTTACCGTATGTTTATTCTGATTTTACCACACTTCGAAAACTTCTTCT
TCGCAGTTTTGCCTCCACTGCTGCGATCGTAGTCCTTTGGGACTTACTTGATGAATTCAAAATTCCTAATATTTCTGAAA
TAGTTTCTCTGGGAATTCTACTATTTTTCGTCTATCTTTTATTCCAAACCTTAATTCTTTTATATTCTTCTAAAAACAAG
GATACCTTATTAAAAATTCTTCCATCCATCGGTCTATTGCTCGTCATTAAACTTACGGAAGTGTTTCGTTATTTTGAAGG
TTCTAAAATCATGGAGCCGATTCATACGTTCCATTATTATTTCTTAATCCTTTCTCCAATCATACTGAATGAATGTATTT
CAATGATCTCTTCAGATATTCAAAAAACCCAAAATAAATTTCTGTTAGACGATTCTACAAAAAATGAAACGGATTCTCCA
AGAGATTCCATTCAGGAAAAAAGATCTCTTTTAGAAGACCTTAATATTGAAAAAGTAGAAAGTAAACTCGCAGAATTGAT
GCAGAATGAAAAAGTTCATCTGGATGAAGAACTTAGACTTCCTTCCCTCGCATCAGAAATGGGCCTTTCCGTACATCACC
TTTCTGCTTTTTTAAATGAACATATGGGAATGAATTTTAATACCTTTATCAACCATCACCGGGTAAAAGAAGCAAAGGTT
ATGTTGTTAGAGGAACCAGATCGTTCCATTCTTTCCATAGGAATGGCCGTAGGTTTTAGTTCTTCTTCCGCATTCCACAG
AGCATTTTTGAAAGAAACCAAAAAATCTCCGAAAGCTTTCAGAGAAGAAAATCTTCCCAATTATAAAAGTAAAGAAGATG
AAATGGAGAGTTTGGATCCTAGATACTCTCATTCGATTTAA

Upstream 100 bases:

>100_bases
AGGTGTGTATTCAAAGAAATGTTTGCAGTTTCTCTACAAATATTTCTTCATTATAGATAAAAGTTTTTGGAGAAAATAGG
AGTAAAAAAAACAAAAGGAA

Downstream 100 bases:

>100_bases
GAATTTGTACTCGAATCAATTTGTAGCTTGAACTAAAAGTAGTTCTTACAAATTTCAATTTCTTAAGATGATTTATAAAT
TTCCGGAGTATTTAAATTGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC Family Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Arac Family; Two-Component Response Regulator; Transcriptional Regulator AraC/XylS Family; Helix-Turn-Helix- Domain Containing Protein AraC Type; Helix-Turn-Helix AraC Type; Transcription Regulator

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MDVQEVEYYSLAATLYFMIAAFGILKRNKQKNIGTPVLFFLMACVFWSFTATIFISENVLAKKLAQYFYAYFSMAIAFFF
MNFVINTKKNNLPYVYSDFTTLRKLLLRSFASTAAIVVLWDLLDEFKIPNISEIVSLGILLFFVYLLFQTLILLYSSKNK
DTLLKILPSIGLLLVIKLTEVFRYFEGSKIMEPIHTFHYYFLILSPIILNECISMISSDIQKTQNKFLLDDSTKNETDSP
RDSIQEKRSLLEDLNIEKVESKLAELMQNEKVHLDEELRLPSLASEMGLSVHHLSAFLNEHMGMNFNTFINHHRVKEAKV
MLLEEPDRSILSIGMAVGFSSSSAFHRAFLKETKKSPKAFREENLPNYKSKEDEMESLDPRYSHSI

Sequences:

>Translated_386_residues
MDVQEVEYYSLAATLYFMIAAFGILKRNKQKNIGTPVLFFLMACVFWSFTATIFISENVLAKKLAQYFYAYFSMAIAFFF
MNFVINTKKNNLPYVYSDFTTLRKLLLRSFASTAAIVVLWDLLDEFKIPNISEIVSLGILLFFVYLLFQTLILLYSSKNK
DTLLKILPSIGLLLVIKLTEVFRYFEGSKIMEPIHTFHYYFLILSPIILNECISMISSDIQKTQNKFLLDDSTKNETDSP
RDSIQEKRSLLEDLNIEKVESKLAELMQNEKVHLDEELRLPSLASEMGLSVHHLSAFLNEHMGMNFNTFINHHRVKEAKV
MLLEEPDRSILSIGMAVGFSSSSAFHRAFLKETKKSPKAFREENLPNYKSKEDEMESLDPRYSHSI
>Mature_386_residues
MDVQEVEYYSLAATLYFMIAAFGILKRNKQKNIGTPVLFFLMACVFWSFTATIFISENVLAKKLAQYFYAYFSMAIAFFF
MNFVINTKKNNLPYVYSDFTTLRKLLLRSFASTAAIVVLWDLLDEFKIPNISEIVSLGILLFFVYLLFQTLILLYSSKNK
DTLLKILPSIGLLLVIKLTEVFRYFEGSKIMEPIHTFHYYFLILSPIILNECISMISSDIQKTQNKFLLDDSTKNETDSP
RDSIQEKRSLLEDLNIEKVESKLAELMQNEKVHLDEELRLPSLASEMGLSVHHLSAFLNEHMGMNFNTFINHHRVKEAKV
MLLEEPDRSILSIGMAVGFSSSSAFHRAFLKETKKSPKAFREENLPNYKSKEDEMESLDPRYSHSI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44644; Mature: 44644

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVQEVEYYSLAATLYFMIAAFGILKRNKQKNIGTPVLFFLMACVFWSFTATIFISENVL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
AKKLAQYFYAYFSMAIAFFFMNFVINTKKNNLPYVYSDFTTLRKLLLRSFASTAAIVVLW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
DLLDEFKIPNISEIVSLGILLFFVYLLFQTLILLYSSKNKDTLLKILPSIGLLLVIKLTE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VFRYFEGSKIMEPIHTFHYYFLILSPIILNECISMISSDIQKTQNKFLLDDSTKNETDSP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCH
RDSIQEKRSLLEDLNIEKVESKLAELMQNEKVHLDEELRLPSLASEMGLSVHHLSAFLNE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCHHHHHHHHHHH
HMGMNFNTFINHHRVKEAKVMLLEEPDRSILSIGMAVGFSSSSAFHRAFLKETKKSPKAF
HCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHH
REENLPNYKSKEDEMESLDPRYSHSI
HHCCCCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDVQEVEYYSLAATLYFMIAAFGILKRNKQKNIGTPVLFFLMACVFWSFTATIFISENVL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
AKKLAQYFYAYFSMAIAFFFMNFVINTKKNNLPYVYSDFTTLRKLLLRSFASTAAIVVLW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
DLLDEFKIPNISEIVSLGILLFFVYLLFQTLILLYSSKNKDTLLKILPSIGLLLVIKLTE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VFRYFEGSKIMEPIHTFHYYFLILSPIILNECISMISSDIQKTQNKFLLDDSTKNETDSP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCH
RDSIQEKRSLLEDLNIEKVESKLAELMQNEKVHLDEELRLPSLASEMGLSVHHLSAFLNE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCHHHHHHHHHHH
HMGMNFNTFINHHRVKEAKVMLLEEPDRSILSIGMAVGFSSSSAFHRAFLKETKKSPKAF
HCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHH
REENLPNYKSKEDEMESLDPRYSHSI
HHCCCCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA