Click here to switch to the map view.

The map label for this gene is 45658945

Identifier: 45658945

GI number: 45658945

Start: 3821306

End: 3821899

Strand: Direct

Name: 45658945

Synonym: LIC13122

Alternate gene names: NA

Gene position: 3821306-3821899 (Clockwise)

Preceding gene: 45658943

Following gene: 45658946

Centisome position: 89.34

GC content: 38.55

Gene sequence:

>594_bases
TTGTGCGATGCGCAAAAGACGCAACCAATTAAAATGAAACTTCTAAAACGATACGCGAATCGAAGACTCTATGATCCTGA
GACGAGTAAAACAATCACTCTAGAAGACGTAGCAGAGATGATTATCAAAGGAGAAGAAATTCGCGTGATCGACAATATGT
CCGGCTCCGATATTACTCCTAAAATTTTAGGACAAACCTTTCTAAAAGTTTCTCTCGGTCAAAGAAACGAAGAATTTTCA
AATTTCATGCTTTCTTCTTTAATCCGCGAAACCGGAAAAGACATAAGTTCTTTATTCGGCAGATTGGTGTTAGGTGGAAT
TGGAACCAATTATCTAACCCGAGATCGTTTGGAAAAAATTCTACAATCCATGATTGCATTAGGCGAACTCAAACTCGAAA
CCGCCACCGAATACAGAGACGATCTATTGACCCGTTTAGCAAACAGAGCATCCGAGAATAAACTTAGGATTCAAGAAGAC
CTTAAAAAAATCGGTAAAGAACTGGAAGAGTCGGCGGAAACTGATTTACCCTTGGAAGATTTATCCGAAAAAATTCGCAA
AATCGCAAAAAGCGTAAAAGAAAAGGATAGTTGA

Upstream 100 bases:

>100_bases
CTCTTCCTTTTTTGAAAGTCCGTTTAAGAAGATACAATCGAACAGTAGGCTTACCATGGGTATTTTGCTTGACCGAAGAC
TTTTTTAGCGAATTCTAGAA

Downstream 100 bases:

>100_bases
AACTTTAAGCCGAAGATTCCGAATACCGATATAATAAGAGAGGGAATTCCATGTTTAAGAATATTTCGATTTCTATCATT
TTGTTTTCTATCAGTATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MCDAQKTQPIKMKLLKRYANRRLYDPETSKTITLEDVAEMIIKGEEIRVIDNMSGSDITPKILGQTFLKVSLGQRNEEFS
NFMLSSLIRETGKDISSLFGRLVLGGIGTNYLTRDRLEKILQSMIALGELKLETATEYRDDLLTRLANRASENKLRIQED
LKKIGKELEESAETDLPLEDLSEKIRKIAKSVKEKDS

Sequences:

>Translated_197_residues
MCDAQKTQPIKMKLLKRYANRRLYDPETSKTITLEDVAEMIIKGEEIRVIDNMSGSDITPKILGQTFLKVSLGQRNEEFS
NFMLSSLIRETGKDISSLFGRLVLGGIGTNYLTRDRLEKILQSMIALGELKLETATEYRDDLLTRLANRASENKLRIQED
LKKIGKELEESAETDLPLEDLSEKIRKIAKSVKEKDS
>Mature_197_residues
MCDAQKTQPIKMKLLKRYANRRLYDPETSKTITLEDVAEMIIKGEEIRVIDNMSGSDITPKILGQTFLKVSLGQRNEEFS
NFMLSSLIRETGKDISSLFGRLVLGGIGTNYLTRDRLEKILQSMIALGELKLETATEYRDDLLTRLANRASENKLRIQED
LKKIGKELEESAETDLPLEDLSEKIRKIAKSVKEKDS

Specific function: Unknown

COG id: COG5394

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012909
- InterPro:   IPR010134
- InterPro:   IPR007897 [H]

Pfam domain/function: PF05233 PHB_acc; PF07879 PHB_acc_N [H]

EC number: NA

Molecular weight: Translated: 22426; Mature: 22426

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCDAQKTQPIKMKLLKRYANRRLYDPETSKTITLEDVAEMIIKGEEIRVIDNMSGSDITP
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHCCCCEEEEECCCCCCCCH
KILGQTFLKVSLGQRNEEFSNFMLSSLIRETGKDISSLFGRLVLGGIGTNYLTRDRLEKI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LQSMIALGELKLETATEYRDDLLTRLANRASENKLRIQEDLKKIGKELEESAETDLPLED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
LSEKIRKIAKSVKEKDS
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCDAQKTQPIKMKLLKRYANRRLYDPETSKTITLEDVAEMIIKGEEIRVIDNMSGSDITP
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHCCCCEEEEECCCCCCCCH
KILGQTFLKVSLGQRNEEFSNFMLSSLIRETGKDISSLFGRLVLGGIGTNYLTRDRLEKI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LQSMIALGELKLETATEYRDDLLTRLANRASENKLRIQEDLKKIGKELEESAETDLPLED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
LSEKIRKIAKSVKEKDS
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1396692 [H]