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The map label for this gene is yddU [C]

Identifier: 45658943

GI number: 45658943

Start: 3818128

End: 3819795

Strand: Direct

Name: yddU [C]

Synonym: LIC13120

Alternate gene names: 45658943

Gene position: 3818128-3819795 (Clockwise)

Preceding gene: 45658941

Following gene: 45658945

Centisome position: 89.27

GC content: 33.21

Gene sequence:

>1668_bases
ATGGGAATACAAAACCTATCTCCATCTTTACAAAAATCGTTATTATATTTTTCAGATCAATCTGCAGAAGGAATTGTTGT
TTTAGATCGAGATTGGAAGACAGTATATGAAAATCATAAGTTTCAAAACTTTTGGTCTTTTCCTAACTTCCAAGTGCTTT
ACGAAAAAATCATTCCACTTCTTAAATCCAAGAAAAAAGAACGTTTCGAAAACGATATAAGCATATCCAATCTTCTTCAA
GAAATTGAAGACTCAAAAGATTCGTTTTTAAATGAAACAAATTTTCAACTCCAACTCAGTGTTCATGATTTCGAAGATTC
TTATATGATTCGATTTAAACCTCAACCAAATGCTCAACCCAAAATAGAATACGAAACCGGTCATTGGGATCGAAACACTA
ATCTTCCCAATCAAAAATATTTTTTAAATCACTTCGGAAATCAAATCTCTGAGGAAACAACCTTTCTAGAAGAACATTTT
TCTTTTTTAATTTCAATCTCCAATCCAGACGCAATCATATCCCAAGAAAGAAATTCCTATTTTGAATCCATTTACGTCAA
AGTAGCAGATCGGTTGAAAAAACACCTAAATCGAAATGACCATCTATTTAGAATTGAGAGTGATAAATTTTTAATTTCAT
CCTTGCAAATAGATTCGGAAACCAAAGCGGAATGGTTCGCGGAATGTATTCGAATGCTTTTTGATTTTCCTTTTACTTAC
GAAGAAAGAGAATTTCATCTTAACGTTAATATAGGTTATACGAAATTCGATTTGAAATCAGGCTCGGACATGAACGCGCT
CGGAATTTTAAAGGAAGCACTTCATCGTTCTTGTTTAATCGGTCCGAATTCTCTATTTTATTATGATCAAAATGCAATCA
TAACCACTTACGAAAAAGCGAAAATAGAAATCGATCTTAGAAAAGTATTAAATCGAAATGAACTGGAAATACACTTTCAA
CCTATTATCGATCTTAAAGAAAACCGCTTTTTTTCTATGGAAACCTTGGTACGTTGGAATCATCCGGAAAAAGGCAAACT
TCTACCCGGTAGTTTTATCTCAATCGCCGAGAGTTCCAGTTTTATCAAAACCATCGGAGAATGGATGATCTGGGAAACGT
TTCAATATTACGAAAATTCAATATTAAGATCCGAAAATATTTCTCTTTCTCTAAATATATCTCCAAAACAACTAGGAGAT
AAAAATATATTTCCTCTTCTTAAAGAAGCGAGTGATTATTATAAAATAGAACCTAATAATATCATTTTAGAAATCGTAGA
AGATTCCTTCGACTTTAGAAAGTCTCAGATCAGCAAGGTAATCACCTCTCTCAAAGATTACGGATTTAAATTTGCAATCG
ACGATTTCGGGAAGGGATATTCTTCCTTGGGAAGACTGATCCATCTTCCAATCGATTACATCAAACTGGATAAGATGTTT
TTATTTAATTACTTTCAAACTTCCACACGAGCTGTGATTACTTCTATGGTAAACTTAGTGCAAGCGATGGGTAAATCAAT
CATCGTAGAAGGAGTAGAAAACGAAACACAACACAATCTTTTAAAAGAACTCAATTGCGATTTCGGACAAGGGTATTATT
ATTCTCATCCGATGGAAATCGAGCTCGCAGAAAAACTAATTCAAAATAAGGCGATCCCCGCTACTTAA

Upstream 100 bases:

>100_bases
CTGTAAAACATTCATTTTTTCATACAAGATTATAATAACATACTTTCTGAATTATAGAACGAACTTCATGGTTACGGTTT
GACATGTTAAGATAAAATAT

Downstream 100 bases:

>100_bases
AAATGTAAATCCGACTTTTTGTCCTCAGATTTCCGCTTTTAAGAAAATTCCATTCCAACGTTAAAAAGTTCCTTCTATAC
GACGTTATTATCAAAAATTT

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MGIQNLSPSLQKSLLYFSDQSAEGIVVLDRDWKTVYENHKFQNFWSFPNFQVLYEKIIPLLKSKKKERFENDISISNLLQ
EIEDSKDSFLNETNFQLQLSVHDFEDSYMIRFKPQPNAQPKIEYETGHWDRNTNLPNQKYFLNHFGNQISEETTFLEEHF
SFLISISNPDAIISQERNSYFESIYVKVADRLKKHLNRNDHLFRIESDKFLISSLQIDSETKAEWFAECIRMLFDFPFTY
EEREFHLNVNIGYTKFDLKSGSDMNALGILKEALHRSCLIGPNSLFYYDQNAIITTYEKAKIEIDLRKVLNRNELEIHFQ
PIIDLKENRFFSMETLVRWNHPEKGKLLPGSFISIAESSSFIKTIGEWMIWETFQYYENSILRSENISLSLNISPKQLGD
KNIFPLLKEASDYYKIEPNNIILEIVEDSFDFRKSQISKVITSLKDYGFKFAIDDFGKGYSSLGRLIHLPIDYIKLDKMF
LFNYFQTSTRAVITSMVNLVQAMGKSIIVEGVENETQHNLLKELNCDFGQGYYYSHPMEIELAEKLIQNKAIPAT

Sequences:

>Translated_555_residues
MGIQNLSPSLQKSLLYFSDQSAEGIVVLDRDWKTVYENHKFQNFWSFPNFQVLYEKIIPLLKSKKKERFENDISISNLLQ
EIEDSKDSFLNETNFQLQLSVHDFEDSYMIRFKPQPNAQPKIEYETGHWDRNTNLPNQKYFLNHFGNQISEETTFLEEHF
SFLISISNPDAIISQERNSYFESIYVKVADRLKKHLNRNDHLFRIESDKFLISSLQIDSETKAEWFAECIRMLFDFPFTY
EEREFHLNVNIGYTKFDLKSGSDMNALGILKEALHRSCLIGPNSLFYYDQNAIITTYEKAKIEIDLRKVLNRNELEIHFQ
PIIDLKENRFFSMETLVRWNHPEKGKLLPGSFISIAESSSFIKTIGEWMIWETFQYYENSILRSENISLSLNISPKQLGD
KNIFPLLKEASDYYKIEPNNIILEIVEDSFDFRKSQISKVITSLKDYGFKFAIDDFGKGYSSLGRLIHLPIDYIKLDKMF
LFNYFQTSTRAVITSMVNLVQAMGKSIIVEGVENETQHNLLKELNCDFGQGYYYSHPMEIELAEKLIQNKAIPAT
>Mature_554_residues
GIQNLSPSLQKSLLYFSDQSAEGIVVLDRDWKTVYENHKFQNFWSFPNFQVLYEKIIPLLKSKKKERFENDISISNLLQE
IEDSKDSFLNETNFQLQLSVHDFEDSYMIRFKPQPNAQPKIEYETGHWDRNTNLPNQKYFLNHFGNQISEETTFLEEHFS
FLISISNPDAIISQERNSYFESIYVKVADRLKKHLNRNDHLFRIESDKFLISSLQIDSETKAEWFAECIRMLFDFPFTYE
EREFHLNVNIGYTKFDLKSGSDMNALGILKEALHRSCLIGPNSLFYYDQNAIITTYEKAKIEIDLRKVLNRNELEIHFQP
IIDLKENRFFSMETLVRWNHPEKGKLLPGSFISIAESSSFIKTIGEWMIWETFQYYENSILRSENISLSLNISPKQLGDK
NIFPLLKEASDYYKIEPNNIILEIVEDSFDFRKSQISKVITSLKDYGFKFAIDDFGKGYSSLGRLIHLPIDYIKLDKMFL
FNYFQTSTRAVITSMVNLVQAMGKSIIVEGVENETQHNLLKELNCDFGQGYYYSHPMEIELAEKLIQNKAIPAT

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=419, Percent_Identity=26.2529832935561, Blast_Score=165, Evalue=9e-42,
Organism=Escherichia coli, GI1787541, Length=347, Percent_Identity=29.3948126801153, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI226510982, Length=268, Percent_Identity=28.7313432835821, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=28.936170212766, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=26.7241379310345, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=29.1666666666667, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=29.8319327731092, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=26.3374485596708, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=29.535864978903, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI87081980, Length=239, Percent_Identity=28.8702928870293, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1788849, Length=242, Percent_Identity=26.0330578512397, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87082096, Length=234, Percent_Identity=29.0598290598291, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 65115; Mature: 64983

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIQNLSPSLQKSLLYFSDQSAEGIVVLDRDWKTVYENHKFQNFWSFPNFQVLYEKIIPL
CCCCCCCHHHHHHHHEEECCCCCEEEEEECCHHHHHCCCCCCHHCCCCCHHHHHHHHHHH
LKSKKKERFENDISISNLLQEIEDSKDSFLNETNFQLQLSVHDFEDSYMIRFKPQPNAQP
HHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCEEEEEEEEECCCCEEEEEECCCCCCC
KIEYETGHWDRNTNLPNQKYFLNHFGNQISEETTFLEEHFSFLISISNPDAIISQERNSY
EEEEECCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHH
FESIYVKVADRLKKHLNRNDHLFRIESDKFLISSLQIDSETKAEWFAECIRMLFDFPFTY
HHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCC
EEREFHLNVNIGYTKFDLKSGSDMNALGILKEALHRSCLIGPNSLFYYDQNAIITTYEKA
CCCEEEEEEEECEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCEEEEECCCEEEEEECE
KIEIDLRKVLNRNELEIHFQPIIDLKENRFFSMETLVRWNHPEKGKLLPGSFISIAESSS
EEEEEHHHHCCCCCEEEEEEEEEECCCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHCCHH
FIKTIGEWMIWETFQYYENSILRSENISLSLNISPKQLGDKNIFPLLKEASDYYKIEPNN
HHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCHHHCCCCCHHHHHHCCCCCEEECCCC
IILEIVEDSFDFRKSQISKVITSLKDYGFKFAIDDFGKGYSSLGRLIHLPIDYIKLDKMF
EEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCHHHCCCEEECCHHHHHHHHHH
LFNYFQTSTRAVITSMVNLVQAMGKSIIVEGVENETQHNLLKELNCDFGQGYYYSHPMEI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEECCCCCH
ELAEKLIQNKAIPAT
HHHHHHHHCCCCCCC
>Mature Secondary Structure 
GIQNLSPSLQKSLLYFSDQSAEGIVVLDRDWKTVYENHKFQNFWSFPNFQVLYEKIIPL
CCCCCCHHHHHHHHEEECCCCCEEEEEECCHHHHHCCCCCCHHCCCCCHHHHHHHHHHH
LKSKKKERFENDISISNLLQEIEDSKDSFLNETNFQLQLSVHDFEDSYMIRFKPQPNAQP
HHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCEEEEEEEEECCCCEEEEEECCCCCCC
KIEYETGHWDRNTNLPNQKYFLNHFGNQISEETTFLEEHFSFLISISNPDAIISQERNSY
EEEEECCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHH
FESIYVKVADRLKKHLNRNDHLFRIESDKFLISSLQIDSETKAEWFAECIRMLFDFPFTY
HHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCC
EEREFHLNVNIGYTKFDLKSGSDMNALGILKEALHRSCLIGPNSLFYYDQNAIITTYEKA
CCCEEEEEEEECEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCEEEEECCCEEEEEECE
KIEIDLRKVLNRNELEIHFQPIIDLKENRFFSMETLVRWNHPEKGKLLPGSFISIAESSS
EEEEEHHHHCCCCCEEEEEEEEEECCCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHCCHH
FIKTIGEWMIWETFQYYENSILRSENISLSLNISPKQLGDKNIFPLLKEASDYYKIEPNN
HHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCHHHCCCCCHHHHHHCCCCCEEECCCC
IILEIVEDSFDFRKSQISKVITSLKDYGFKFAIDDFGKGYSSLGRLIHLPIDYIKLDKMF
EEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCHHHCCCEEECCHHHHHHHHHH
LFNYFQTSTRAVITSMVNLVQAMGKSIIVEGVENETQHNLLKELNCDFGQGYYYSHPMEI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEECCCCCH
ELAEKLIQNKAIPAT
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]