Click here to switch to the map view.

The map label for this gene is 45658883

Identifier: 45658883

GI number: 45658883

Start: 3730663

End: 3731019

Strand: Reverse

Name: 45658883

Synonym: LIC13057

Alternate gene names: NA

Gene position: 3731019-3730663 (Counterclockwise)

Preceding gene: 45658884

Following gene: 45658881

Centisome position: 87.23

GC content: 36.41

Gene sequence:

>357_bases
ATGTCCGACTTAAAAGTGATCAGTTTATATTTCATGACGGCCTTTTATATCGCCGCGGGAGTTCTTCATTTTGTATTACC
TAGATTTTATTTAAGAATCATGCCGCCTTATATTCCGTATCCTAAGTTAGTGGTTTATCTAAGCGGTTTGATTGAAATCG
GACTTGGAGCTATGTTAACTCTTTCTGATACTAGATCGCTCGGAGCCTGGGGAGTGATTCTTCTTTTGATTGTCGTATTT
CCTGCAAATTTTTATCACTATCAATCCAGAAGAAAAACCGATCCTCCTAAATGGGTTTTACTTTTAAGACTTCCGTTGCA
ACTTTTATTAATCTGTTGGGCTTATACATTTACTTAA

Upstream 100 bases:

>100_bases
CTGAGAACCTCTACTTTTTTGGTTAGAATGACTTGGTTTCAAATTCATAATTTCTTTTGAGGTTTGGGAACAAGTTCTAA
ATTAAAAAAGGAAATTTCTT

Downstream 100 bases:

>100_bases
TTTTTAAATATAATAATATTCTAAATATTGATTGAAATATTTTTATCTTAGAATGAGTTATATTTGAACCTTATAAAAAA
GTGCGTGAACTGTTGTATGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MSDLKVISLYFMTAFYIAAGVLHFVLPRFYLRIMPPYIPYPKLVVYLSGLIEIGLGAMLTLSDTRSLGAWGVILLLIVVF
PANFYHYQSRRKTDPPKWVLLLRLPLQLLLICWAYTFT

Sequences:

>Translated_118_residues
MSDLKVISLYFMTAFYIAAGVLHFVLPRFYLRIMPPYIPYPKLVVYLSGLIEIGLGAMLTLSDTRSLGAWGVILLLIVVF
PANFYHYQSRRKTDPPKWVLLLRLPLQLLLICWAYTFT
>Mature_117_residues
SDLKVISLYFMTAFYIAAGVLHFVLPRFYLRIMPPYIPYPKLVVYLSGLIEIGLGAMLTLSDTRSLGAWGVILLLIVVFP
ANFYHYQSRRKTDPPKWVLLLRLPLQLLLICWAYTFT

Specific function: Unknown

COG id: COG4270

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13629; Mature: 13498

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLKVISLYFMTAFYIAAGVLHFVLPRFYLRIMPPYIPYPKLVVYLSGLIEIGLGAMLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE
LSDTRSLGAWGVILLLIVVFPANFYHYQSRRKTDPPKWVLLLRLPLQLLLICWAYTFT
ECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDLKVISLYFMTAFYIAAGVLHFVLPRFYLRIMPPYIPYPKLVVYLSGLIEIGLGAMLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE
LSDTRSLGAWGVILLLIVVFPANFYHYQSRRKTDPPKWVLLLRLPLQLLLICWAYTFT
ECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA