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The map label for this gene is 45658830

Identifier: 45658830

GI number: 45658830

Start: 3653236

End: 3654825

Strand: Reverse

Name: 45658830

Synonym: LIC13003

Alternate gene names: NA

Gene position: 3654825-3653236 (Counterclockwise)

Preceding gene: 45658832

Following gene: 45658828

Centisome position: 85.45

GC content: 38.55

Gene sequence:

>1590_bases
TTGATTTCAGTTTGTATTTTTAACGAGACGATTGATATGAACGAGCCGCGAAAAGAAAATAAAATTTCTCTTGAAGAAAT
TAAAAATTGCATTCGAGTTTTAGAAATTTTAACCATAAATCCCCAATTACTTACTTCTCTTCCCGAAAAGGAACGGATCG
CTTTGATGATCGTTGCCGGAAAAATTTCCCGTCCCGATCGAAACGAAATTAGAATTCGAAATAAAACAATTAAACATTCG
AGAAGAAAAGAAATTGTCATTCAAGAAAGGCAGGCGAGGGCCGCGACCGGAATTCGATTGGCTCGAACGACTCCAGTATT
TAAAGCTCCTCTTCAAATCTCGGATCAAACCGATATTTGGAAAAACGAAAATGCGCCTAAACTTTCTTCTCCACGTAATT
GTTATGTATGTAAAAAGGAATATACTCGTCTTCATTTTTTTTACGATTCTATGTGTCCGGAATGTGGGGAGCTGAATTAT
AAAAAAAGATTTCAAACTGCGTCCTTACACGGACAGGTCGCTTTGATTACTGGTTCCAGATTGAAGATAGGTTATCAGTC
AACTCTAATGCTTTTAAGAGCGGGAGCGACAGTAATCGCCACTACTCGTTTTCCGGTGGACGCAGCATTACGTTTTTCTA
AAGAAGACGATTTTTCAGACTGGTCCGATCGTCTTCAAATTTTTGGTTTGGATCTAAGGCATACTCCAAGTGTGGAACTT
TTTGCGAGTTATATAGAACAAACCGTAGATCGTTTAGACATTATTATTAATAACGCGGCTCAGACGGTTCGGAGACCTCC
CGGATTTTATTCTCATTTGATGAAATTGGAATCATTAGATTTCCATGATATACCAAAAGAAACCTCTCAACTTTTAAAAC
TTCATAAGGATTGTAAAGATAAGCTTGAATCTTTTGGCGGGGCGAATCTTGCCAACGAAACGGCTCTTCCCGTAAGTTGG
AATGGAAAAATTCCAGGAGTTGGAATCCGTTCTTCCGCGCAACTTTCTCAAATTCCCTATTCACACGATAATTCTTTTGA
GTTAGAAACTGTTTTTCCAGAAGGTCAAATGGACGCGGACTTACAACAGATTGATCTTAGAAAAACAAACAGCTGGAGGC
TGAAATTAGGAGAAATTCAGACTTCTGAAATGTTAGAAGTCCAACTTGTAAATTCTGTTGCTCCTTTTGTTCTTTGTAAT
CGTCTCGTATCTGTTATGCGAAGGGAAAATACGGGTCAAAAACATATCGTAAACGTCTCTGCGATGGAAGGAAAATTCCA
TCGTTTTAAAAAAGAAGACAGACATCCTCATACTAATATGGCAAAAGCCGCTTTGAATATGCTTACACATACCTCAGCGA
GTGATTTTGCAAAAGACGGGATTTATATGAATGCAGTAGATACTGGTTGGGTAACCGACGAGGATCCTGTAGAATTGTCC
CAAAAAAAACAAGACCTTCATGATTTTCAACCTCCGTTAGATATAGTGGACGGAGCCGCAAGAGTTTGTGATCCTATTTT
TGACGGAATTCTTACTGGTAAACATTGGTGCGGCAAATTTTTAAAAGATTACTTTCCGATCGATTGGTGA

Upstream 100 bases:

>100_bases
TGTAGAATATAGATATAGTTTTTGCATTTCCAAGCTTGGAAATACAAGTTGTTTAGGAATTGATTTTTATGAAATAATTT
AAACGAAGTTTAAACTGTTT

Downstream 100 bases:

>100_bases
GCCACGTATATTAATGTGAGTTCGACGTAAAAAAATCTGGGTGAATCCGGCTACCACAGACAGTCCGGACCGGACTCTCA
GCTCTGGTTAATAAATTGTA

Product: short-chain dehydrogenase

Products: NA

Alternate protein names: Short Chain Dehydrogenase; Dehydrogenase; Short Chain Dehydrogenase/Reductase Family Oxidoreductase; Short-Chain Dehydrogenase; Oxidoreductase Short Chain Dehydrogenase/Reductase Family; Short-Chain Alcohol Dehydrogenase Like Protein; Short-Chain Dehydrogenases/Reductases Family Protein; Short-Chain Dehydrogenase/Reductase SDR

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MISVCIFNETIDMNEPRKENKISLEEIKNCIRVLEILTINPQLLTSLPEKERIALMIVAGKISRPDRNEIRIRNKTIKHS
RRKEIVIQERQARAATGIRLARTTPVFKAPLQISDQTDIWKNENAPKLSSPRNCYVCKKEYTRLHFFYDSMCPECGELNY
KKRFQTASLHGQVALITGSRLKIGYQSTLMLLRAGATVIATTRFPVDAALRFSKEDDFSDWSDRLQIFGLDLRHTPSVEL
FASYIEQTVDRLDIIINNAAQTVRRPPGFYSHLMKLESLDFHDIPKETSQLLKLHKDCKDKLESFGGANLANETALPVSW
NGKIPGVGIRSSAQLSQIPYSHDNSFELETVFPEGQMDADLQQIDLRKTNSWRLKLGEIQTSEMLEVQLVNSVAPFVLCN
RLVSVMRRENTGQKHIVNVSAMEGKFHRFKKEDRHPHTNMAKAALNMLTHTSASDFAKDGIYMNAVDTGWVTDEDPVELS
QKKQDLHDFQPPLDIVDGAARVCDPIFDGILTGKHWCGKFLKDYFPIDW

Sequences:

>Translated_529_residues
MISVCIFNETIDMNEPRKENKISLEEIKNCIRVLEILTINPQLLTSLPEKERIALMIVAGKISRPDRNEIRIRNKTIKHS
RRKEIVIQERQARAATGIRLARTTPVFKAPLQISDQTDIWKNENAPKLSSPRNCYVCKKEYTRLHFFYDSMCPECGELNY
KKRFQTASLHGQVALITGSRLKIGYQSTLMLLRAGATVIATTRFPVDAALRFSKEDDFSDWSDRLQIFGLDLRHTPSVEL
FASYIEQTVDRLDIIINNAAQTVRRPPGFYSHLMKLESLDFHDIPKETSQLLKLHKDCKDKLESFGGANLANETALPVSW
NGKIPGVGIRSSAQLSQIPYSHDNSFELETVFPEGQMDADLQQIDLRKTNSWRLKLGEIQTSEMLEVQLVNSVAPFVLCN
RLVSVMRRENTGQKHIVNVSAMEGKFHRFKKEDRHPHTNMAKAALNMLTHTSASDFAKDGIYMNAVDTGWVTDEDPVELS
QKKQDLHDFQPPLDIVDGAARVCDPIFDGILTGKHWCGKFLKDYFPIDW
>Mature_529_residues
MISVCIFNETIDMNEPRKENKISLEEIKNCIRVLEILTINPQLLTSLPEKERIALMIVAGKISRPDRNEIRIRNKTIKHS
RRKEIVIQERQARAATGIRLARTTPVFKAPLQISDQTDIWKNENAPKLSSPRNCYVCKKEYTRLHFFYDSMCPECGELNY
KKRFQTASLHGQVALITGSRLKIGYQSTLMLLRAGATVIATTRFPVDAALRFSKEDDFSDWSDRLQIFGLDLRHTPSVEL
FASYIEQTVDRLDIIINNAAQTVRRPPGFYSHLMKLESLDFHDIPKETSQLLKLHKDCKDKLESFGGANLANETALPVSW
NGKIPGVGIRSSAQLSQIPYSHDNSFELETVFPEGQMDADLQQIDLRKTNSWRLKLGEIQTSEMLEVQLVNSVAPFVLCN
RLVSVMRRENTGQKHIVNVSAMEGKFHRFKKEDRHPHTNMAKAALNMLTHTSASDFAKDGIYMNAVDTGWVTDEDPVELS
QKKQDLHDFQPPLDIVDGAARVCDPIFDGILTGKHWCGKFLKDYFPIDW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60345; Mature: 60345

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVCIFNETIDMNEPRKENKISLEEIKNCIRVLEILTINPQLLTSLPEKERIALMIVAG
CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEEC
KISRPDRNEIRIRNKTIKHSRRKEIVIQERQARAATGIRLARTTPVFKAPLQISDQTDIW
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEECCEEECCCCCCC
KNENAPKLSSPRNCYVCKKEYTRLHFFYDSMCPECGELNYKKRFQTASLHGQVALITGSR
CCCCCCCCCCCCCEEEECHHHHEEEEEHHHHCCCCCCCCHHHHHHECCCCCEEEEEECCE
LKIGYQSTLMLLRAGATVIATTRFPVDAALRFSKEDDFSDWSDRLQIFGLDLRHTPSVEL
EEECHHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCCCCCHHCCEEEEEECCCCCCCHHH
FASYIEQTVDRLDIIINNAAQTVRRPPGFYSHLMKLESLDFHDIPKETSQLLKLHKDCKD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
KLESFGGANLANETALPVSWNGKIPGVGIRSSAQLSQIPYSHDNSFELETVFPEGQMDAD
HHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCC
LQQIDLRKTNSWRLKLGEIQTSEMLEVQLVNSVAPFVLCNRLVSVMRRENTGQKHIVNVS
HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
AMEGKFHRFKKEDRHPHTNMAKAALNMLTHTSASDFAKDGIYMNAVDTGWVTDEDPVELS
HHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCCCCCCCCHHHH
QKKQDLHDFQPPLDIVDGAARVCDPIFDGILTGKHWCGKFLKDYFPIDW
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MISVCIFNETIDMNEPRKENKISLEEIKNCIRVLEILTINPQLLTSLPEKERIALMIVAG
CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEEC
KISRPDRNEIRIRNKTIKHSRRKEIVIQERQARAATGIRLARTTPVFKAPLQISDQTDIW
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEECCEEECCCCCCC
KNENAPKLSSPRNCYVCKKEYTRLHFFYDSMCPECGELNYKKRFQTASLHGQVALITGSR
CCCCCCCCCCCCCEEEECHHHHEEEEEHHHHCCCCCCCCHHHHHHECCCCCEEEEEECCE
LKIGYQSTLMLLRAGATVIATTRFPVDAALRFSKEDDFSDWSDRLQIFGLDLRHTPSVEL
EEECHHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCCCCCHHCCEEEEEECCCCCCCHHH
FASYIEQTVDRLDIIINNAAQTVRRPPGFYSHLMKLESLDFHDIPKETSQLLKLHKDCKD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
KLESFGGANLANETALPVSWNGKIPGVGIRSSAQLSQIPYSHDNSFELETVFPEGQMDAD
HHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCC
LQQIDLRKTNSWRLKLGEIQTSEMLEVQLVNSVAPFVLCNRLVSVMRRENTGQKHIVNVS
HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
AMEGKFHRFKKEDRHPHTNMAKAALNMLTHTSASDFAKDGIYMNAVDTGWVTDEDPVELS
HHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCCCCCCCCHHHH
QKKQDLHDFQPPLDIVDGAARVCDPIFDGILTGKHWCGKFLKDYFPIDW
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA