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The map label for this gene is yobU [H]

Identifier: 45658807

GI number: 45658807

Start: 3617602

End: 3618057

Strand: Direct

Name: yobU [H]

Synonym: LIC12980

Alternate gene names: 45658807

Gene position: 3617602-3618057 (Clockwise)

Preceding gene: 45658805

Following gene: 45658808

Centisome position: 84.58

GC content: 34.21

Gene sequence:

>456_bases
ATGAAAGAATGTTTAATGCCAAAAAAGTATCTTATTGGAATTGGAACTCGTACAAAAAATGAAAACGAAATGGGATCAAA
CGGAAACATTCCGAAGTTATGGGAAAAATTTTTTGGTGAAGTTCTACCTAAACTTAAAACCACAGACAAGTTCATCTATG
CCGTTTACAAAGATTATGAAAGTGATGAAAACGGAGAATACTCTTATTTCATCGGAGTTCCTTCTGATGAAATAAATATT
TTCGAAACAGTTCAACTTCCAGAAGGAAAATATTTGGAACTGACTTCGTTAAAAGGTAAAAGCCCCAATATAATCATTGA
GCTCTGGCAAAAAGTTTGGACAAATTCGGATATAAAACGCAGAAGAGCCTTTGAAGTAGACTATGAAATTTATCCAATTG
ACTTTTCGGAGACTCCAGAAACTCAAGTCCACCTTCTTCTTTCCGTTAAAGACTGA

Upstream 100 bases:

>100_bases
CCATCTTATTTAAACGCAAATATTTGCTTAAATTTTATTTCTACTTAATTAAGAGAATACTCTTCTCTTAATTAAATGTT
TAACGAACAGGATAAAAATT

Downstream 100 bases:

>100_bases
CAAGAATTAATAGTTAAGTACTTTATAAAGTTATTAACTATTAATTTATAATTTTCTGCACAACAGTCACTATGTTTTTT
TAAGTTCTGTCGAACGAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MKECLMPKKYLIGIGTRTKNENEMGSNGNIPKLWEKFFGEVLPKLKTTDKFIYAVYKDYESDENGEYSYFIGVPSDEINI
FETVQLPEGKYLELTSLKGKSPNIIIELWQKVWTNSDIKRRRAFEVDYEIYPIDFSETPETQVHLLLSVKD

Sequences:

>Translated_151_residues
MKECLMPKKYLIGIGTRTKNENEMGSNGNIPKLWEKFFGEVLPKLKTTDKFIYAVYKDYESDENGEYSYFIGVPSDEINI
FETVQLPEGKYLELTSLKGKSPNIIIELWQKVWTNSDIKRRRAFEVDYEIYPIDFSETPETQVHLLLSVKD
>Mature_151_residues
MKECLMPKKYLIGIGTRTKNENEMGSNGNIPKLWEKFFGEVLPKLKTTDKFIYAVYKDYESDENGEYSYFIGVPSDEINI
FETVQLPEGKYLELTSLKGKSPNIIIELWQKVWTNSDIKRRRAFEVDYEIYPIDFSETPETQVHLLLSVKD

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 17659; Mature: 17659

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKECLMPKKYLIGIGTRTKNENEMGSNGNIPKLWEKFFGEVLPKLKTTDKFIYAVYKDYE
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
SDENGEYSYFIGVPSDEINIFETVQLPEGKYLELTSLKGKSPNIIIELWQKVWTNSDIKR
CCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHH
RRAFEVDYEIYPIDFSETPETQVHLLLSVKD
HEEEEECEEEEECCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKECLMPKKYLIGIGTRTKNENEMGSNGNIPKLWEKFFGEVLPKLKTTDKFIYAVYKDYE
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
SDENGEYSYFIGVPSDEINIFETVQLPEGKYLELTSLKGKSPNIIIELWQKVWTNSDIKR
CCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHH
RRAFEVDYEIYPIDFSETPETQVHLLLSVKD
HEEEEECEEEEECCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]