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The map label for this gene is 45658743

Identifier: 45658743

GI number: 45658743

Start: 3538266

End: 3539981

Strand: Direct

Name: 45658743

Synonym: LIC12913

Alternate gene names: NA

Gene position: 3538266-3539981 (Clockwise)

Preceding gene: 45658742

Following gene: 45658744

Centisome position: 82.72

GC content: 34.67

Gene sequence:

>1716_bases
ATGATCCTACAAGAATTAGTAAAATATTATGAACGAAAATTAGAAGAAAGGGAAATAGCGAGAGAAGGATTTGAAACAAA
AGAAATTCCTTATTTGATCGAAATTGATGAAGAAGGAAATTTCATTCGATTTATATCAACTTGGCAAGACGAAAAAAAGA
AACGGGCTTCCTCATATACAATTCCAAAAGCAGTCATAAGATCCAGAGGCATCGAAGCAAACTTACTCTGGGATAATTTT
GAATATATTTTCGGTTTAGAAAAAAAAGAAAAACAAAAAGATTTTATCCGCAAAATTCAAGATTTAGAAAGTAAATCCGA
AGAGCCCTCATCTTTAACATCCATTCTAAATTTCTTTTCTAAATTGAAAATGCCCGAACTTAAAAAAGATCCTCTCTGGG
CTGAAATCGAAGAGGACAAACACTATCTCACTTTTAAACTACAAGGACAAAATGAAATCATCTGTTCCGATAAAACAATC
GTTCAAACGATTTCCCAAAACGCATCCGATGATGAAGTAGAAAAAGGAATCTGTTTAGTTAGCGGAAAAACGAATCCCAT
AGAAAGACTCCATTCTAAAATTAGTTTAACCGGAGCTAATACTTCCGGCGCCAATTTAGTTTCGTTCAATCTGGACGCCT
TTGAATCTTATGGAAAAAAACAAGGTTCCAATGCTCCTACAAGCAAATACGCAAACTTTGCATACGGAACTTCGATCAGT
TCATTAACCTCAAAAGATAGCCGCCAAAAAATACTCATAGGAAATACTACCATGATGTTTTGGTCGGAAACTAAAAATGA
ATTAGAAGACGAATTCCTATCTTTATTAAAACCATCAGATGAAGACCAAAAAAAAGACTCAAAACGAGAACAAGAAGCAC
GCAGTAATCAAACGATCAAAGAACATTTCGTTTCTCCTTTTACCGGAAAGTTGCAACATCTATTAAACGACGGAACCAAA
TTTTTTATCTTAGGTCTTGCACCTAACGCGGCCAGGATTTCCGTTCGTTTTTGGTATCCTTCCACAGTCGGAGAAATTTC
TAAAAATATAAACCAACATTTTACGGATATTAAATTAGAGATTTATAATGTTGAGTCCGGTTTTATCAGTTTAAATCGAA
TCCTAAGTTCCACTGCCATTCAAGGTAAAATGGAAAATGTCAGTCCATTATTAAGTGGTAAATTAGTTACTTCTATTATT
AGCGGAAGTGAATATCCAAGAACCTTACTTTCTTCTATTTTGATCCGACTTAAGGCAGAGAAAGAAATTTCTTTTGTAAG
AGTTTCCGTACTAAAAGCAATACTCAATCGTAAAGGAAGATTTGAAAAATTTAAAAACTATAAGGAGTTAACGACATCCA
TGGATGAAGAAAATATAAACGTAGCCTATCGACTAGGAAGACTTTTCGCCGTAATGGAAAGATTACAGGAAAGAGCAAAT
CCGGGAATCAATGCTACTATCAGAGACAGATACTTTTCCTCTGCATCTTCAAGACCTGCTACTGTATTTCCGGTATTATT
CAACCTAAGTATGCATCACGCTTCTAAATCCGGAAGTGTTTGGTTCGAAAAATTAAAAGGCGAAATTTTAGCTCCTTTAT
CGGGAAGAATCCCCAACACATTCAGTCTCGAAGAACAAGGGTTATTTGCAGTCGGCTATTATCACCAAAGAAACGAATTA
TTTAAGAAAAAAGAAGAACTATCACAAGGAGAATAA

Upstream 100 bases:

>100_bases
ATACAAAAAGTTATAAGGACGCCAATCCAAAATTTTTTCGAGCAGTAATCCAAAATGGTAGTATTGTAATTCCAGATTTG
AATACCAATGGAGCGAGACT

Downstream 100 bases:

>100_bases
AAATGAGCAATCCAATTCAAAATCGGTACGAATTTGTCTATTTATTTGACGTGAAAGACGGAAATCCAAACGGAGATCCT
GACGCTGGGAATCAACCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Csd1 Family Protein; CRISPR-Associated RAMP Csd1 Family Protein; Csd1 Family CRISPR-Associated Protein; Crispr-Protein; CRISPR-Associated Protein; CRISPR-Associated Protein Csd2 Family; Crispr-Associated Protein Csd1 Family

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MILQELVKYYERKLEEREIAREGFETKEIPYLIEIDEEGNFIRFISTWQDEKKKRASSYTIPKAVIRSRGIEANLLWDNF
EYIFGLEKKEKQKDFIRKIQDLESKSEEPSSLTSILNFFSKLKMPELKKDPLWAEIEEDKHYLTFKLQGQNEIICSDKTI
VQTISQNASDDEVEKGICLVSGKTNPIERLHSKISLTGANTSGANLVSFNLDAFESYGKKQGSNAPTSKYANFAYGTSIS
SLTSKDSRQKILIGNTTMMFWSETKNELEDEFLSLLKPSDEDQKKDSKREQEARSNQTIKEHFVSPFTGKLQHLLNDGTK
FFILGLAPNAARISVRFWYPSTVGEISKNINQHFTDIKLEIYNVESGFISLNRILSSTAIQGKMENVSPLLSGKLVTSII
SGSEYPRTLLSSILIRLKAEKEISFVRVSVLKAILNRKGRFEKFKNYKELTTSMDEENINVAYRLGRLFAVMERLQERAN
PGINATIRDRYFSSASSRPATVFPVLFNLSMHHASKSGSVWFEKLKGEILAPLSGRIPNTFSLEEQGLFAVGYYHQRNEL
FKKKEELSQGE

Sequences:

>Translated_571_residues
MILQELVKYYERKLEEREIAREGFETKEIPYLIEIDEEGNFIRFISTWQDEKKKRASSYTIPKAVIRSRGIEANLLWDNF
EYIFGLEKKEKQKDFIRKIQDLESKSEEPSSLTSILNFFSKLKMPELKKDPLWAEIEEDKHYLTFKLQGQNEIICSDKTI
VQTISQNASDDEVEKGICLVSGKTNPIERLHSKISLTGANTSGANLVSFNLDAFESYGKKQGSNAPTSKYANFAYGTSIS
SLTSKDSRQKILIGNTTMMFWSETKNELEDEFLSLLKPSDEDQKKDSKREQEARSNQTIKEHFVSPFTGKLQHLLNDGTK
FFILGLAPNAARISVRFWYPSTVGEISKNINQHFTDIKLEIYNVESGFISLNRILSSTAIQGKMENVSPLLSGKLVTSII
SGSEYPRTLLSSILIRLKAEKEISFVRVSVLKAILNRKGRFEKFKNYKELTTSMDEENINVAYRLGRLFAVMERLQERAN
PGINATIRDRYFSSASSRPATVFPVLFNLSMHHASKSGSVWFEKLKGEILAPLSGRIPNTFSLEEQGLFAVGYYHQRNEL
FKKKEELSQGE
>Mature_571_residues
MILQELVKYYERKLEEREIAREGFETKEIPYLIEIDEEGNFIRFISTWQDEKKKRASSYTIPKAVIRSRGIEANLLWDNF
EYIFGLEKKEKQKDFIRKIQDLESKSEEPSSLTSILNFFSKLKMPELKKDPLWAEIEEDKHYLTFKLQGQNEIICSDKTI
VQTISQNASDDEVEKGICLVSGKTNPIERLHSKISLTGANTSGANLVSFNLDAFESYGKKQGSNAPTSKYANFAYGTSIS
SLTSKDSRQKILIGNTTMMFWSETKNELEDEFLSLLKPSDEDQKKDSKREQEARSNQTIKEHFVSPFTGKLQHLLNDGTK
FFILGLAPNAARISVRFWYPSTVGEISKNINQHFTDIKLEIYNVESGFISLNRILSSTAIQGKMENVSPLLSGKLVTSII
SGSEYPRTLLSSILIRLKAEKEISFVRVSVLKAILNRKGRFEKFKNYKELTTSMDEENINVAYRLGRLFAVMERLQERAN
PGINATIRDRYFSSASSRPATVFPVLFNLSMHHASKSGSVWFEKLKGEILAPLSGRIPNTFSLEEQGLFAVGYYHQRNEL
FKKKEELSQGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65287; Mature: 65287

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILQELVKYYERKLEEREIAREGFETKEIPYLIEIDEEGNFIRFISTWQDEKKKRASSYT
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHCCC
IPKAVIRSRGIEANLLWDNFEYIFGLEKKEKQKDFIRKIQDLESKSEEPSSLTSILNFFS
CHHHHHHHCCCEEEEEECCCHHEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
KLKMPELKKDPLWAEIEEDKHYLTFKLQGQNEIICSDKTIVQTISQNASDDEVEKGICLV
HCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEECCHHHHHHHHCCCCCHHHHCCEEEE
SGKTNPIERLHSKISLTGANTSGANLVSFNLDAFESYGKKQGSNAPTSKYANFAYGTSIS
ECCCCHHHHHHHHEEEECCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHCCCCCCCCCHH
SLTSKDSRQKILIGNTTMMFWSETKNELEDEFLSLLKPSDEDQKKDSKREQEARSNQTIK
HHHCCCCCCEEEECCEEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHH
EHFVSPFTGKLQHLLNDGTKFFILGLAPNAARISVRFWYPSTVGEISKNINQHFTDIKLE
HHCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHCCEEEEE
IYNVESGFISLNRILSSTAIQGKMENVSPLLSGKLVTSIISGSEYPRTLLSSILIRLKAE
EEECCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
KEISFVRVSVLKAILNRKGRFEKFKNYKELTTSMDEENINVAYRLGRLFAVMERLQERAN
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PGINATIRDRYFSSASSRPATVFPVLFNLSMHHASKSGSVWFEKLKGEILAPLSGRIPNT
CCCCEEEHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHCCCEECCCCCCCCCC
FSLEEQGLFAVGYYHQRNELFKKKEELSQGE
CCCCCCCEEEEEEEHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MILQELVKYYERKLEEREIAREGFETKEIPYLIEIDEEGNFIRFISTWQDEKKKRASSYT
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHCCC
IPKAVIRSRGIEANLLWDNFEYIFGLEKKEKQKDFIRKIQDLESKSEEPSSLTSILNFFS
CHHHHHHHCCCEEEEEECCCHHEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
KLKMPELKKDPLWAEIEEDKHYLTFKLQGQNEIICSDKTIVQTISQNASDDEVEKGICLV
HCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEECCHHHHHHHHCCCCCHHHHCCEEEE
SGKTNPIERLHSKISLTGANTSGANLVSFNLDAFESYGKKQGSNAPTSKYANFAYGTSIS
ECCCCHHHHHHHHEEEECCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHCCCCCCCCCHH
SLTSKDSRQKILIGNTTMMFWSETKNELEDEFLSLLKPSDEDQKKDSKREQEARSNQTIK
HHHCCCCCCEEEECCEEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHH
EHFVSPFTGKLQHLLNDGTKFFILGLAPNAARISVRFWYPSTVGEISKNINQHFTDIKLE
HHCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHCCEEEEE
IYNVESGFISLNRILSSTAIQGKMENVSPLLSGKLVTSIISGSEYPRTLLSSILIRLKAE
EEECCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
KEISFVRVSVLKAILNRKGRFEKFKNYKELTTSMDEENINVAYRLGRLFAVMERLQERAN
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PGINATIRDRYFSSASSRPATVFPVLFNLSMHHASKSGSVWFEKLKGEILAPLSGRIPNT
CCCCEEEHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHCCCEECCCCCCCCCC
FSLEEQGLFAVGYYHQRNELFKKKEELSQGE
CCCCCCCEEEEEEEHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA