Click here to switch to the map view.

The map label for this gene is 45658648

Identifier: 45658648

GI number: 45658648

Start: 3422352

End: 3422852

Strand: Reverse

Name: 45658648

Synonym: LIC12818

Alternate gene names: NA

Gene position: 3422852-3422352 (Counterclockwise)

Preceding gene: 45658649

Following gene: 45658647

Centisome position: 80.03

GC content: 37.52

Gene sequence:

>501_bases
ATGAATCCAATTTACTTACAATCTTTTGGAGAATCGGAAGAAGCGAAGAAACATTTTTTGACCGCTTACGATTATCAAAC
CAAGGGAAATCTCAAACTGGCTTCTAAACATTATAGAATGTCCATTGCCGCAAAACCCACCTCAGAAGCCTGGACGTTTT
TAGGTTGGTCTTATTCTCTTGCTGGTAAGTTAAATCGTGCGATTGAATTTTGTAAAATTGCAATTGAAACGGATCCTACA
TTAGGAAATCCTTATAATGATATAGGGGTTTATTTACTTCAGCAAAAACGTTTTCAAGAGGCACTTTCTTGGTTTGAAAA
AGCAAAGTTGGCTCCTCGTTATGAGGTCCCAGTGTATCCTTATTTTAATGCTGGTTCCTGTTTGGAAATTTTGGGTCATA
TCGAATTGGCTCGCTTGGAATACGAGAAGGCGATTCAAATTCAGCCAAATTATCCTCCTGCAAATCTTGCCTTGAAGAGA
ATTTATATCCGTTATAACTGA

Upstream 100 bases:

>100_bases
ACTCTACAATCATTTTTCAAATGAAGTGGATAATTTTTTTAATACCACCTTTCTGAAATTCTTAAACTTTTCCATAAAAT
GAACGTCGTCTAAAGTATAG

Downstream 100 bases:

>100_bases
TGTAGATTTGGCTCTTTGTATTTTAAGGTGAGTTCAACGTAAGAAAATTTAGGCGAATCCAGCTTGTGCTGTTGGATCCA
CCGGGAAATTCAGCAAGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: TPR-Repeat-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MNPIYLQSFGESEEAKKHFLTAYDYQTKGNLKLASKHYRMSIAAKPTSEAWTFLGWSYSLAGKLNRAIEFCKIAIETDPT
LGNPYNDIGVYLLQQKRFQEALSWFEKAKLAPRYEVPVYPYFNAGSCLEILGHIELARLEYEKAIQIQPNYPPANLALKR
IYIRYN

Sequences:

>Translated_166_residues
MNPIYLQSFGESEEAKKHFLTAYDYQTKGNLKLASKHYRMSIAAKPTSEAWTFLGWSYSLAGKLNRAIEFCKIAIETDPT
LGNPYNDIGVYLLQQKRFQEALSWFEKAKLAPRYEVPVYPYFNAGSCLEILGHIELARLEYEKAIQIQPNYPPANLALKR
IYIRYN
>Mature_166_residues
MNPIYLQSFGESEEAKKHFLTAYDYQTKGNLKLASKHYRMSIAAKPTSEAWTFLGWSYSLAGKLNRAIEFCKIAIETDPT
LGNPYNDIGVYLLQQKRFQEALSWFEKAKLAPRYEVPVYPYFNAGSCLEILGHIELARLEYEKAIQIQPNYPPANLALKR
IYIRYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19197; Mature: 19197

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPIYLQSFGESEEAKKHFLTAYDYQTKGNLKLASKHYRMSIAAKPTSEAWTFLGWSYSL
CCCEEECCCCCCHHHHHHEEEEEEECCCCCEEEECCEEEEEEEECCCCCCEEEECEEHHH
AGKLNRAIEFCKIAIETDPTLGNPYNDIGVYLLQQKRFQEALSWFEKAKLAPRYEVPVYP
HHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
YFNAGSCLEILGHIELARLEYEKAIQIQPNYPPANLALKRIYIRYN
ECCCCCHHHHHHHHHHEEECCCEEEEECCCCCCHHEEEEEEEEEEC
>Mature Secondary Structure
MNPIYLQSFGESEEAKKHFLTAYDYQTKGNLKLASKHYRMSIAAKPTSEAWTFLGWSYSL
CCCEEECCCCCCHHHHHHEEEEEEECCCCCEEEECCEEEEEEEECCCCCCEEEECEEHHH
AGKLNRAIEFCKIAIETDPTLGNPYNDIGVYLLQQKRFQEALSWFEKAKLAPRYEVPVYP
HHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
YFNAGSCLEILGHIELARLEYEKAIQIQPNYPPANLALKRIYIRYN
ECCCCCHHHHHHHHHHEEECCCEEEEECCCCCCHHEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA