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The map label for this gene is 45658564

Identifier: 45658564

GI number: 45658564

Start: 3323552

End: 3325582

Strand: Direct

Name: 45658564

Synonym: LIC12730

Alternate gene names: NA

Gene position: 3323552-3325582 (Clockwise)

Preceding gene: 45658563

Following gene: 45658565

Centisome position: 77.7

GC content: 36.39

Gene sequence:

>2031_bases
ATGCATTTTCACAGACTTTTTATTATTTTAGTCTTTACCTCAGCTACGTTATCCTTGAGTTCTGACGGACTTCCCAATTT
CTCTATTCAAGAAAAAGAAGCAAGAACTCAATTTACAAGAGGGTTCTCTTATTTTAATAATTCTCAGTATTCATCCGCAA
GAGAGAATTTTTTAAAAGCGCTTTCAATTAAAAATGATTTTACATTAGCTCGGCTCCTACTTTCAAACTCATACTACCTC
TCTGGGGATTGGCCTGAAAGTATGTCGGAATTAGAACAAATTGAAGGTACGATAGGACTGAATCAAATCCAAAAAGCACG
ATTAGACGCCCTAAGAATTAATCTAGCTGGTGGAAGTCAAGATTTAACAGTCCGGTACTACTCTGCAATTTTAGGTGATG
AACTCAGACGTTTTAGATTTCGAAATCCATCTGATGTAGCCGTTGATGACGATGGATTTCTTTATGTCCTCTCCTTTGAT
ACAGCAAATATTGTAAAATTTGACCCAAACGGTAATCCTATAGATAACTTTAAAGGATCTTTAGGTCGGAATTTAACGGG
TCCCCTATTCTTTTCATTAAGAGCAAATTCAATCTTTGTGGCTGATTTTAAAGCTGATAAAATTTACGAATTCAATACAA
GAGGCGAATATATCAACCGATTCGGAAGTTCTGGAAAAACGAATGGTGCATTTCATGGACCGACCGGCATATTTTATACA
AAAAACGGTTATCTTTATGTCTCAGACTCCGGAAACAATCGAATCCAGAAATTAAAATCAGACGGTACCTTTGTACAAGA
AATTGGGGTCGGAATTCTACGCAACCCATCTGGGCTAAAAATCAATTCCAAAGGAGAAATCTACGTAGCTGATCGAGGTA
ATTCCCGAATCGCGGTATTCGATCCGGAAGGGAATTTTCTTCGAGAAATTACCAATCCAAACATACTATCTTCGCCCCGC
AATCTAACAATTCGAAAAAACGAAATTTACATTTCCGATGAAAAGTCGGGACTCGTCATTTATAATACCATAGACAATAC
TTGGAGATTATTAGATTCTTTTCGAGATTCTAAAAATGTTGTCCGAAAACTGAATCAACCATTCTCTTCCACCTTTGACT
ATACCGGAACACAGTTCATTGCAGATTTCAATCGGCATCGAGTAGAAATTTTCAGCCCTTCCAATCAATTGTCTTCTAAC
ATGGACGTAGTATTGGAAAAAGTTTTAAATCATGACTATCCGGATATTTCTGTATTTCTACGTGTAAGAGACCGATCGGG
CAGAGACATCAAAACAATTCCAAGAAATTCATTTAAGGTTTATGAATACGGAAATCTTTCTCCGTTGATCGGCCTTACGG
ACATGCGACAATTTAACAATCGAATTTCTTTATCCCTCGTTTATGAAAATACTTCCGAAGTTAAAGCAGCTTATCCTGTA
TTTGAAAAGTCCTTAAGACCACTATTAACTTCACTTCGACAATACGATGGAATTGAAGTATTGCGTTCGGGAACGGAATT
GATCAAAGCTTCTGATTTCAACTACTCTATGCATGAAATTTTTAGAATATTAAGAACTTCTCCTAGTGATACTAGTTCTA
AAACAGGAAAAGCAATCTATAGAGGAATATCCGATTTGCTTGGACGCCTAGGACCTAGAATCGTATTAGTTTTAGTTTCA
GGAAATTCGTATCCGGATTCTTTTACCCAAATCTCATCGGAAAAAATCATACGCTATTCTAAAGCACATTCAATTCCAAT
CTATTTCTTATCACTTTCAGATTCGGGATCGGCAGTCGAAACCTATAAAATGATCGCCGCTTCTACCGGAGGAAAGTTTA
TCTTAATCCCAGGCGAAGGATCAGAAAAAAATCTTTATAATTCTTTTTTATCTCATAAAGACAGACGTTATATTGTATCC
TTCAAAAGTAGAATCGACGCGGATAAGAAAGATTTTTATATCCCCTTAGTTATAGAAGCGAATTTTAGAAACACATCCGG
AAAAACGGAAGCTGGATTTTTTACGAAATGA

Upstream 100 bases:

>100_bases
TAAATATGATGAAGATCCTATTGTAGGAGCTTCAATAAAAAATTCTTGAAATTATGTCTCTTCAAGTGACTCATAGAGAT
AGAGGCAAAAATAAGCATCC

Downstream 100 bases:

>100_bases
TTTTAAGTTTTTTACAAAAACCTTTTCTATATCTATTATTTCTGATTTTATACTTATCCATCGGATCAACTCATTCGCAA
GATACAGTTCGAAAAATCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NHL Repeat-Containing Protein; NHL Repeat Protein; Tripartite Motif-Containing Protein; PA14 Domain-Containing Protein; Tetratricopeptide Repeat Family Protein; Ring Finger; Tetratricopeptide Repeat-Containing Protein; SMP-30/Gluconolaconase/LRE Domain Protein; PKD Domain Containing Protein; Cell Surface Protein; NHL/RHS/YD Repeat-Containing Protein; Surface Layer Protein

Number of amino acids: Translated: 676; Mature: 676

Protein sequence:

>676_residues
MHFHRLFIILVFTSATLSLSSDGLPNFSIQEKEARTQFTRGFSYFNNSQYSSARENFLKALSIKNDFTLARLLLSNSYYL
SGDWPESMSELEQIEGTIGLNQIQKARLDALRINLAGGSQDLTVRYYSAILGDELRRFRFRNPSDVAVDDDGFLYVLSFD
TANIVKFDPNGNPIDNFKGSLGRNLTGPLFFSLRANSIFVADFKADKIYEFNTRGEYINRFGSSGKTNGAFHGPTGIFYT
KNGYLYVSDSGNNRIQKLKSDGTFVQEIGVGILRNPSGLKINSKGEIYVADRGNSRIAVFDPEGNFLREITNPNILSSPR
NLTIRKNEIYISDEKSGLVIYNTIDNTWRLLDSFRDSKNVVRKLNQPFSSTFDYTGTQFIADFNRHRVEIFSPSNQLSSN
MDVVLEKVLNHDYPDISVFLRVRDRSGRDIKTIPRNSFKVYEYGNLSPLIGLTDMRQFNNRISLSLVYENTSEVKAAYPV
FEKSLRPLLTSLRQYDGIEVLRSGTELIKASDFNYSMHEIFRILRTSPSDTSSKTGKAIYRGISDLLGRLGPRIVLVLVS
GNSYPDSFTQISSEKIIRYSKAHSIPIYFLSLSDSGSAVETYKMIAASTGGKFILIPGEGSEKNLYNSFLSHKDRRYIVS
FKSRIDADKKDFYIPLVIEANFRNTSGKTEAGFFTK

Sequences:

>Translated_676_residues
MHFHRLFIILVFTSATLSLSSDGLPNFSIQEKEARTQFTRGFSYFNNSQYSSARENFLKALSIKNDFTLARLLLSNSYYL
SGDWPESMSELEQIEGTIGLNQIQKARLDALRINLAGGSQDLTVRYYSAILGDELRRFRFRNPSDVAVDDDGFLYVLSFD
TANIVKFDPNGNPIDNFKGSLGRNLTGPLFFSLRANSIFVADFKADKIYEFNTRGEYINRFGSSGKTNGAFHGPTGIFYT
KNGYLYVSDSGNNRIQKLKSDGTFVQEIGVGILRNPSGLKINSKGEIYVADRGNSRIAVFDPEGNFLREITNPNILSSPR
NLTIRKNEIYISDEKSGLVIYNTIDNTWRLLDSFRDSKNVVRKLNQPFSSTFDYTGTQFIADFNRHRVEIFSPSNQLSSN
MDVVLEKVLNHDYPDISVFLRVRDRSGRDIKTIPRNSFKVYEYGNLSPLIGLTDMRQFNNRISLSLVYENTSEVKAAYPV
FEKSLRPLLTSLRQYDGIEVLRSGTELIKASDFNYSMHEIFRILRTSPSDTSSKTGKAIYRGISDLLGRLGPRIVLVLVS
GNSYPDSFTQISSEKIIRYSKAHSIPIYFLSLSDSGSAVETYKMIAASTGGKFILIPGEGSEKNLYNSFLSHKDRRYIVS
FKSRIDADKKDFYIPLVIEANFRNTSGKTEAGFFTK
>Mature_676_residues
MHFHRLFIILVFTSATLSLSSDGLPNFSIQEKEARTQFTRGFSYFNNSQYSSARENFLKALSIKNDFTLARLLLSNSYYL
SGDWPESMSELEQIEGTIGLNQIQKARLDALRINLAGGSQDLTVRYYSAILGDELRRFRFRNPSDVAVDDDGFLYVLSFD
TANIVKFDPNGNPIDNFKGSLGRNLTGPLFFSLRANSIFVADFKADKIYEFNTRGEYINRFGSSGKTNGAFHGPTGIFYT
KNGYLYVSDSGNNRIQKLKSDGTFVQEIGVGILRNPSGLKINSKGEIYVADRGNSRIAVFDPEGNFLREITNPNILSSPR
NLTIRKNEIYISDEKSGLVIYNTIDNTWRLLDSFRDSKNVVRKLNQPFSSTFDYTGTQFIADFNRHRVEIFSPSNQLSSN
MDVVLEKVLNHDYPDISVFLRVRDRSGRDIKTIPRNSFKVYEYGNLSPLIGLTDMRQFNNRISLSLVYENTSEVKAAYPV
FEKSLRPLLTSLRQYDGIEVLRSGTELIKASDFNYSMHEIFRILRTSPSDTSSKTGKAIYRGISDLLGRLGPRIVLVLVS
GNSYPDSFTQISSEKIIRYSKAHSIPIYFLSLSDSGSAVETYKMIAASTGGKFILIPGEGSEKNLYNSFLSHKDRRYIVS
FKSRIDADKKDFYIPLVIEANFRNTSGKTEAGFFTK

Specific function: Unknown

COG id: COG3391

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32454739, Length=161, Percent_Identity=36.6459627329193, Blast_Score=107, Evalue=4e-23,
Organism=Homo sapiens, GI32454737, Length=161, Percent_Identity=36.6459627329193, Blast_Score=107, Evalue=4e-23,
Organism=Homo sapiens, GI194248081, Length=167, Percent_Identity=34.7305389221557, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI194248079, Length=167, Percent_Identity=34.7305389221557, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI84993742, Length=186, Percent_Identity=28.494623655914, Blast_Score=82, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17553622, Length=171, Percent_Identity=35.672514619883, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71980713, Length=196, Percent_Identity=30.6122448979592, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71980716, Length=196, Percent_Identity=30.6122448979592, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17554338, Length=145, Percent_Identity=30.3448275862069, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221330419, Length=171, Percent_Identity=32.7485380116959, Blast_Score=88, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24655386, Length=171, Percent_Identity=32.7485380116959, Blast_Score=88, Evalue=2e-17,
Organism=Drosophila melanogaster, GI22024206, Length=171, Percent_Identity=32.7485380116959, Blast_Score=88, Evalue=2e-17,
Organism=Drosophila melanogaster, GI221330033, Length=247, Percent_Identity=25.5060728744939, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI221330031, Length=247, Percent_Identity=25.5060728744939, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24586266, Length=247, Percent_Identity=25.5060728744939, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24586264, Length=247, Percent_Identity=25.5060728744939, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI22026822, Length=247, Percent_Identity=25.5060728744939, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45552407, Length=255, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19549884, Length=255, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17136846, Length=255, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76453; Mature: 76453

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS51125 NHL L=RR ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHFHRLFIILVFTSATLSLSSDGLPNFSIQEKEARTQFTRGFSYFNNSQYSSARENFLKA
CCHHHEEEEEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LSIKNDFTLARLLLSNSYYLSGDWPESMSELEQIEGTIGLNQIQKARLDALRINLAGGSQ
HCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCCHHHHHHHCEEEEEEEECCCCC
DLTVRYYSAILGDELRRFRFRNPSDVAVDDDGFLYVLSFDTANIVKFDPNGNPIDNFKGS
CEEHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEECCCEEEEECCCCCCCCCCCHH
LGRNLTGPLFFSLRANSIFVADFKADKIYEFNTRGEYINRFGSSGKTNGAFHGPTGIFYT
CCCCCCCCEEEEEECCEEEEEEECCCCEEEECCCHHHHHHHCCCCCCCCEEECCCEEEEE
KNGYLYVSDSGNNRIQKLKSDGTFVQEIGVGILRNPSGLKINSKGEIYVADRGNSRIAVF
CCCEEEEECCCCCHHHHHHCCCCCHHHCCCEEEECCCCCEECCCCCEEEEECCCCEEEEE
DPEGNFLREITNPNILSSPRNLTIRKNEIYISDEKSGLVIYNTIDNTWRLLDSFRDSKNV
CCCCCHHHHCCCCCCCCCCCCEEEEECEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
VRKLNQPFSSTFDYTGTQFIADFNRHRVEIFSPSNQLSSNMDVVLEKVLNHDYPDISVFL
HHHHCCCHHCCCCCCCHHHHCCCCCCEEEEECCCHHHCCCHHHHHHHHHCCCCCCEEEEE
RVRDRSGRDIKTIPRNSFKVYEYGNLSPLIGLTDMRQFNNRISLSLVYENTSEVKAAYPV
EEECCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCEEEEEEEECCCCHHHHHHHH
FEKSLRPLLTSLRQYDGIEVLRSGTELIKASDFNYSMHEIFRILRTSPSDTSSKTGKAIY
HHHHHHHHHHHHHHCCCHHHHHCCCHHEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
RGISDLLGRLGPRIVLVLVSGNSYPDSFTQISSEKIIRYSKAHSIPIYFLSLSDSGSAVE
HHHHHHHHCCCCEEEEEEEECCCCCCHHHHHCHHHHHEECCCCCCEEEEEEECCCCCHHH
TYKMIAASTGGKFILIPGEGSEKNLYNSFLSHKDRRYIVSFKSRIDADKKDFYIPLVIEA
HEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEHHHCCCCCCCEEEEEEEEE
NFRNTSGKTEAGFFTK
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHFHRLFIILVFTSATLSLSSDGLPNFSIQEKEARTQFTRGFSYFNNSQYSSARENFLKA
CCHHHEEEEEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LSIKNDFTLARLLLSNSYYLSGDWPESMSELEQIEGTIGLNQIQKARLDALRINLAGGSQ
HCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCCHHHHHHHCEEEEEEEECCCCC
DLTVRYYSAILGDELRRFRFRNPSDVAVDDDGFLYVLSFDTANIVKFDPNGNPIDNFKGS
CEEHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEECCCEEEEECCCCCCCCCCCHH
LGRNLTGPLFFSLRANSIFVADFKADKIYEFNTRGEYINRFGSSGKTNGAFHGPTGIFYT
CCCCCCCCEEEEEECCEEEEEEECCCCEEEECCCHHHHHHHCCCCCCCCEEECCCEEEEE
KNGYLYVSDSGNNRIQKLKSDGTFVQEIGVGILRNPSGLKINSKGEIYVADRGNSRIAVF
CCCEEEEECCCCCHHHHHHCCCCCHHHCCCEEEECCCCCEECCCCCEEEEECCCCEEEEE
DPEGNFLREITNPNILSSPRNLTIRKNEIYISDEKSGLVIYNTIDNTWRLLDSFRDSKNV
CCCCCHHHHCCCCCCCCCCCCEEEEECEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
VRKLNQPFSSTFDYTGTQFIADFNRHRVEIFSPSNQLSSNMDVVLEKVLNHDYPDISVFL
HHHHCCCHHCCCCCCCHHHHCCCCCCEEEEECCCHHHCCCHHHHHHHHHCCCCCCEEEEE
RVRDRSGRDIKTIPRNSFKVYEYGNLSPLIGLTDMRQFNNRISLSLVYENTSEVKAAYPV
EEECCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCEEEEEEEECCCCHHHHHHHH
FEKSLRPLLTSLRQYDGIEVLRSGTELIKASDFNYSMHEIFRILRTSPSDTSSKTGKAIY
HHHHHHHHHHHHHHCCCHHHHHCCCHHEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
RGISDLLGRLGPRIVLVLVSGNSYPDSFTQISSEKIIRYSKAHSIPIYFLSLSDSGSAVE
HHHHHHHHCCCCEEEEEEEECCCCCCHHHHHCHHHHHEECCCCCCEEEEEEECCCCCHHH
TYKMIAASTGGKFILIPGEGSEKNLYNSFLSHKDRRYIVSFKSRIDADKKDFYIPLVIEA
HEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEHHHCCCCCCCEEEEEEEEE
NFRNTSGKTEAGFFTK
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA