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The map label for this gene is rbfA

Identifier: 45658539

GI number: 45658539

Start: 3289710

End: 3290063

Strand: Reverse

Name: rbfA

Synonym: LIC12704

Alternate gene names: 45658539

Gene position: 3290063-3289710 (Counterclockwise)

Preceding gene: 45658540

Following gene: 161621773

Centisome position: 76.92

GC content: 41.81

Gene sequence:

>354_bases
ATGAATCCGATCCGAAGAAGAAAAATTGAAGCGGAAGCGGTTCGAACCGTTGCAATGATGATTCTATCGGGTAAGGTAAA
AGACCCGAGGGTGCATATGGTTTCCGTACATCGTGCGGAAATATCCGAAGACGGAAAGAATATGAAAGTGTTCGTGACTG
CAATTTGCACTGACAAAAAAAAAATAAAAGTATTATCCGGACTCAATAGCGCCTCAGGTTTATTCCAGGCGACGTTGTCC
GGAAAGTTAGGACTTAGAATTACACCTAAAATGCATTTTCTCTGGGATGAGGAATATATTCAGAGTTTGGATGAATCGCT
CAGACTTACTAGAAAACCCACGAACACAGACTGA

Upstream 100 bases:

>100_bases
TGGAATTCAAGTAGATGGATACAATGACTTTAAAGTCGGAGATACGATCGAGGCTTATAACGTAACTGTAATTAAGCGGA
AACTCGAATAGGAAAATCGG

Downstream 100 bases:

>100_bases
ATCTGGATTTTTACTGATCCATAAACCGGTAGGTATGACTTCTTCGGATTTAGTGGTTACCGTTCGTAAAAAACTAGGAT
TTAAGAAAGTAGGTCATACT

Product: ribosomal-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKKKIKVLSGLNSASGLFQATLS
GKLGLRITPKMHFLWDEEYIQSLDESLRLTRKPTNTD

Sequences:

>Translated_117_residues
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKKKIKVLSGLNSASGLFQATLS
GKLGLRITPKMHFLWDEEYIQSLDESLRLTRKPTNTD
>Mature_117_residues
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKKKIKVLSGLNSASGLFQATLS
GKLGLRITPKMHFLWDEEYIQSLDESLRLTRKPTNTD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13225; Mature: 13225

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHCCCCCCEEEEEEEEECCCH
KIKVLSGLNSASGLFQATLSGKLGLRITPKMHFLWDEEYIQSLDESLRLTRKPTNTD
HHHEECCCCCCCHHEEEECCCCCCEEECCCEEEEECHHHHHHHHHHHEECCCCCCCC
>Mature Secondary Structure
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHCCCCCCEEEEEEEEECCCH
KIKVLSGLNSASGLFQATLSGKLGLRITPKMHFLWDEEYIQSLDESLRLTRKPTNTD
HHHEECCCCCCCHHEEEECCCCCCEEECCCEEEEECHHHHHHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA