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The map label for this gene is vapC

Identifier: 45658497

GI number: 45658497

Start: 3222893

End: 3223291

Strand: Direct

Name: vapC

Synonym: LIC12660

Alternate gene names: NA

Gene position: 3222893-3223291 (Clockwise)

Preceding gene: 45658496

Following gene: 45658498

Centisome position: 75.35

GC content: 28.57

Gene sequence:

>399_bases
ATGTATCTTTTGGATACCAATATTTGTATTTTTCTAATTAAAAAGAAAAATGCGACTCTGTTAGAAAATCTTAAGAAAAA
ATTAAATAAAGATCTATTTGTTTCGTCTTTAACTGTTGCGGAACTTGAGTTTGGAATTCAGAAAAGCGAATTTAAAGAAA
AGAATAAAGTTGCACTAATCGAATTTTTAACGATTTTCAATATACTTTCCTTTTCTGATAAAGATGCAGAGTCTTACGGT
ATCATCAGAGCGGATTTGGAGAGGAAAGGTAATGTAATCGGTTCAATAGACATGTTACTTGCCGCTCAAGCAATTGCTAA
TAATTATATCTTTGTTACTAATAATACAAAAGAATTTAAAAGAATTAAGGCTTTAAAAATAGAAAATTGGACACAGTAG

Upstream 100 bases:

>100_bases
AGGCCTGGAACGTATTTTTAGAAGGATTGAACGGGTTTTCAGATGATTTCTTTAAGGAGGGGAGAGAACAACCGAAATCT
GATAAAAGAGAAAAACTTTA

Downstream 100 bases:

>100_bases
TAAATCCAATCGCCACTACAACTAACTTCGTCTCCTCGCTCCGTTAAGCGTAATTGCATAAACTCAATGTAACTCAAATA
TTTTAGGAGAATATATTTTG

Product: DNA binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MYLLDTNICIFLIKKKNATLLENLKKKLNKDLFVSSLTVAELEFGIQKSEFKEKNKVALIEFLTIFNILSFSDKDAESYG
IIRADLERKGNVIGSIDMLLAAQAIANNYIFVTNNTKEFKRIKALKIENWTQ

Sequences:

>Translated_132_residues
MYLLDTNICIFLIKKKNATLLENLKKKLNKDLFVSSLTVAELEFGIQKSEFKEKNKVALIEFLTIFNILSFSDKDAESYG
IIRADLERKGNVIGSIDMLLAAQAIANNYIFVTNNTKEFKRIKALKIENWTQ
>Mature_132_residues
MYLLDTNICIFLIKKKNATLLENLKKKLNKDLFVSSLTVAELEFGIQKSEFKEKNKVALIEFLTIFNILSFSDKDAESYG
IIRADLERKGNVIGSIDMLLAAQAIANNYIFVTNNTKEFKRIKALKIENWTQ

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 15140; Mature: 15140

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLLDTNICIFLIKKKNATLLENLKKKLNKDLFVSSLTVAELEFGIQKSEFKEKNKVALI
CEEECCCEEEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHH
EFLTIFNILSFSDKDAESYGIIRADLERKGNVIGSIDMLLAAQAIANNYIFVTNNTKEFK
HHHHHHHHHCCCCCCCCCCCEEEECHHHCCCEEEHHHHHHHHHHHHCCEEEEECCHHHHH
RIKALKIENWTQ
HHHHEECCCCCC
>Mature Secondary Structure
MYLLDTNICIFLIKKKNATLLENLKKKLNKDLFVSSLTVAELEFGIQKSEFKEKNKVALI
CEEECCCEEEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHH
EFLTIFNILSFSDKDAESYGIIRADLERKGNVIGSIDMLLAAQAIANNYIFVTNNTKEFK
HHHHHHHHHCCCCCCCCCCCEEEECHHHCCCEEEHHHHHHHHHHHHCCEEEEECCHHHHH
RIKALKIENWTQ
HHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]