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The map label for this gene is vapB

Identifier: 45658496

GI number: 45658496

Start: 3222663

End: 3222893

Strand: Direct

Name: vapB

Synonym: LIC12659

Alternate gene names: 45658496

Gene position: 3222663-3222893 (Clockwise)

Preceding gene: 45658495

Following gene: 45658497

Centisome position: 75.35

GC content: 35.93

Gene sequence:

>231_bases
ATGCAAACAGCCAAATTATTTATAAATGGAAGAAGTCAAGCGGTCAGATTACCAAAAGAATTTCAATTTACCGGAGATGA
TGTTCTTATCCAAAAAGTTGGAGAGGCGGTAATATTGGTTCCGAAAAACAAGGCCTGGAACGTATTTTTAGAAGGATTGA
ACGGGTTTTCAGATGATTTCTTTAAGGAGGGGAGAGAACAACCGAAATCTGATAAAAGAGAAAAACTTTAA

Upstream 100 bases:

>100_bases
TAGCTGAAATGGCGAAAAATTAACTATAATATAGATAAATTTCAAAAAGAATCTCTTGACAGATATATATCATGATATAT
ACTAATTTCGGAGATAACTA

Downstream 100 bases:

>100_bases
TGTATCTTTTGGATACCAATATTTGTATTTTTCTAATTAAAAAGAAAAATGCGACTCTGTTAGAAAATCTTAAGAAAAAA
TTAAATAAAGATCTATTTGT

Product: putative virulence-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MQTAKLFINGRSQAVRLPKEFQFTGDDVLIQKVGEAVILVPKNKAWNVFLEGLNGFSDDFFKEGREQPKSDKREKL

Sequences:

>Translated_76_residues
MQTAKLFINGRSQAVRLPKEFQFTGDDVLIQKVGEAVILVPKNKAWNVFLEGLNGFSDDFFKEGREQPKSDKREKL
>Mature_76_residues
MQTAKLFINGRSQAVRLPKEFQFTGDDVLIQKVGEAVILVPKNKAWNVFLEGLNGFSDDFFKEGREQPKSDKREKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 8699; Mature: 8699

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTAKLFINGRSQAVRLPKEFQFTGDDVLIQKVGEAVILVPKNKAWNVFLEGLNGFSDDF
CCCEEEEEECCCCEEECCCCCEECCCHHHHHHCCCEEEEEECCCCEEEEEECCCCCCHHH
FKEGREQPKSDKREKL
HHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQTAKLFINGRSQAVRLPKEFQFTGDDVLIQKVGEAVILVPKNKAWNVFLEGLNGFSDDF
CCCEEEEEECCCCEEECCCCCEECCCHHHHHHCCCEEEEEECCCCEEEEEECCCCCCHHH
FKEGREQPKSDKREKL
HHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1748867; 1398971; 8169216; 8914257 [H]