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The map label for this gene is 45658394

Identifier: 45658394

GI number: 45658394

Start: 3091895

End: 3092797

Strand: Direct

Name: 45658394

Synonym: LIC12553

Alternate gene names: NA

Gene position: 3091895-3092797 (Clockwise)

Preceding gene: 45658393

Following gene: 45658396

Centisome position: 72.29

GC content: 32.12

Gene sequence:

>903_bases
ATGGCTCAAAGTATTCGGATTAAAAATATTCTCAATAAAACGAAACGAAGAGATCCTTGGTTTTTAGACGACTATACAAT
CAATCCGTATAGCGGTTGTTCTTTTCGTTGTTTATATTGTTACGTAAAAGGTAGTAAATACGGCCTAAACGTTGAAGATA
AACTTTCTATTAAAGAAAACGCTGTTGAAATTCTAGACAAACAATTATCTAACCTTGCTAAAAAGAATCGACACGGTATT
ATCGTTCTTTCCTCTGCTACTGATCCTTATTTACAACTTGAAAAAGAACGCGGTCTTACCAGAGAATTACTTAAGATAAT
TTTAAAGTATAAATTTCCAGTTCATATACTTACTAAATCAGATTTAATTTTACGAGACCTAGATTTGTTAAGCGAAATTG
AAAAAAACGCAATTCTTCCAGTAGATTTGCAAAACCAATTAAGCCGTAAATCGTTTATTACGTTTTCATTTTCTATTCTG
GATGATTCTATTGCTAAAATTTTTGAACCAGGTGCAACCTCTCCTAGTTTACGCATCTCTGCACTTAAAGAAACTTTAAA
AGAAGGTTTTTTTTCCGGAGTAAGTTTGATGCCCTTACTTCCTCATATTTCAGACACAGGGGAAAATTTAGAATTTATGT
TTCAAACGTTTCAAGAGATCGGAATCCGATATATCTTCCCTGCGAGTTTGACTCTTTTTGGAGGAAACGATCCTTTGGAT
CATAAAAATCTAATTTTTAAAGCGATCGAAAATCACTTTCCTCATCTACTTTCCAAATATCAAAAATTTTTTTCCAAAAA
TTTCAGAATGCCCAATTTCTATCAAAACGCTCTTTACCACAAAACTTCCGAGTTATGTTCTAAATACGGTTTACAAAAAG
GAATTTTGACAACTGAATTCTAA

Upstream 100 bases:

>100_bases
GATATCATTCAAAAATTTGAATCTAATTTACTAGCAAACCCTTCTATTCAACCGTTTTTTAGAAAAAAAATAGAAATTGG
CCTAAGTAGATCTTCAAAGT

Downstream 100 bases:

>100_bases
GTCTGTCATTCCAAACCTAAAGACTATATAAATTTGATAATGGAGAAGAATTACTGGAAAGGATCAAGGTTTTTGTGGTA
GTATTATAGTTTATTATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MAQSIRIKNILNKTKRRDPWFLDDYTINPYSGCSFRCLYCYVKGSKYGLNVEDKLSIKENAVEILDKQLSNLAKKNRHGI
IVLSSATDPYLQLEKERGLTRELLKIILKYKFPVHILTKSDLILRDLDLLSEIEKNAILPVDLQNQLSRKSFITFSFSIL
DDSIAKIFEPGATSPSLRISALKETLKEGFFSGVSLMPLLPHISDTGENLEFMFQTFQEIGIRYIFPASLTLFGGNDPLD
HKNLIFKAIENHFPHLLSKYQKFFSKNFRMPNFYQNALYHKTSELCSKYGLQKGILTTEF

Sequences:

>Translated_300_residues
MAQSIRIKNILNKTKRRDPWFLDDYTINPYSGCSFRCLYCYVKGSKYGLNVEDKLSIKENAVEILDKQLSNLAKKNRHGI
IVLSSATDPYLQLEKERGLTRELLKIILKYKFPVHILTKSDLILRDLDLLSEIEKNAILPVDLQNQLSRKSFITFSFSIL
DDSIAKIFEPGATSPSLRISALKETLKEGFFSGVSLMPLLPHISDTGENLEFMFQTFQEIGIRYIFPASLTLFGGNDPLD
HKNLIFKAIENHFPHLLSKYQKFFSKNFRMPNFYQNALYHKTSELCSKYGLQKGILTTEF
>Mature_299_residues
AQSIRIKNILNKTKRRDPWFLDDYTINPYSGCSFRCLYCYVKGSKYGLNVEDKLSIKENAVEILDKQLSNLAKKNRHGII
VLSSATDPYLQLEKERGLTRELLKIILKYKFPVHILTKSDLILRDLDLLSEIEKNAILPVDLQNQLSRKSFITFSFSILD
DSIAKIFEPGATSPSLRISALKETLKEGFFSGVSLMPLLPHISDTGENLEFMFQTFQEIGIRYIFPASLTLFGGNDPLDH
KNLIFKAIENHFPHLLSKYQKFFSKNFRMPNFYQNALYHKTSELCSKYGLQKGILTTEF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34554; Mature: 34422

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQSIRIKNILNKTKRRDPWFLDDYTINPYSGCSFRCLYCYVKGSKYGLNVEDKLSIKEN
CCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCHHHH
AVEILDKQLSNLAKKNRHGIIVLSSATDPYLQLEKERGLTRELLKIILKYKFPVHILTKS
HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEEECC
DLILRDLDLLSEIEKNAILPVDLQNQLSRKSFITFSFSILDDSIAKIFEPGATSPSLRIS
CHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHEEEEEHHHHHHHHHHHHCCCCCCCCHHHH
ALKETLKEGFFSGVSLMPLLPHISDTGENLEFMFQTFQEIGIRYIFPASLTLFGGNDPLD
HHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEECCEEEEECCCCCCC
HKNLIFKAIENHFPHLLSKYQKFFSKNFRMPNFYQNALYHKTSELCSKYGLQKGILTTEF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCC
>Mature Secondary Structure 
AQSIRIKNILNKTKRRDPWFLDDYTINPYSGCSFRCLYCYVKGSKYGLNVEDKLSIKEN
CCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCHHHH
AVEILDKQLSNLAKKNRHGIIVLSSATDPYLQLEKERGLTRELLKIILKYKFPVHILTKS
HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEEECC
DLILRDLDLLSEIEKNAILPVDLQNQLSRKSFITFSFSILDDSIAKIFEPGATSPSLRIS
CHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHEEEEEHHHHHHHHHHHHCCCCCCCCHHHH
ALKETLKEGFFSGVSLMPLLPHISDTGENLEFMFQTFQEIGIRYIFPASLTLFGGNDPLD
HHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEECCEEEEECCCCCCC
HKNLIFKAIENHFPHLLSKYQKFFSKNFRMPNFYQNALYHKTSELCSKYGLQKGILTTEF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]