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The map label for this gene is ycaJ [C]

Identifier: 45658352

GI number: 45658352

Start: 3039028

End: 3040299

Strand: Reverse

Name: ycaJ [C]

Synonym: LIC12510

Alternate gene names: 45658352

Gene position: 3040299-3039028 (Counterclockwise)

Preceding gene: 45658353

Following gene: 45658349

Centisome position: 71.08

GC content: 39.86

Gene sequence:

>1272_bases
GTGAGCGATCTTTTTACCAAAAAACCGATCCCACCCCTCGCCCATAAAATACGACCTTCCAGTTTTGAAGAAGTAATCGG
ACAGTCTAAAGCGACAAAACAACTCGCCAATTATCGATTTCCGGTTTCTATTATCTTATACGGGCCACCTGGAACTGGAA
AATCAACGTTAGCCGGAATTCTATGCAGAAAATGGAACCTTCCATTTGTCGAATACAATGCAGTTTCTACTGGAGTGGCA
GAGATCAAAAAATTATTGGAAAGGGCAGAACGCGAAGGAACCATCCTACTGTTTTTGGATGAAATTCATCGTTTTAGTGC
GTCTCAACAAGATAGTCTTTTAAAAGGAGTGGAAACCGGGCATTTGATATTGATCGGCGCTACAACCGAAAATCCAGCGT
TTCGAATCACAAGACCTCTATTGTCCAGATGTCAGATTCTTAAAATAGAACCTTTGAGTTTAGAGGAACAGTCTTCTCTT
TTAGAAAGAGGAATTCAAAATATAGAATATTCTATAAATCTAAATCAAGATGCAAAGGAAACTCTAATTCGTTTTTCGGG
AGGAGACGGAAGAAAATTACTTTCTAACTTAGAAGGTTTGAGTTTTAGTTTTCCTGAAAATCATACTATCTCTAAATCGG
ATGTGGAAGAATATTTAGAAAGTCGTGTAATCGAATATGATAAAAGTGGAGAATCTCATTACGACGTGATCTCTGCGTTT
ATCAAATCGGTGCGAGGAAGTGATCCTGATGCGGCATTGTATTATTTAGCAGTTTTGCTCGAAGGAGGGGAGGATCCACT
TTTTATTATGCGAAGGTTGATCATTCTCGCGAGTGAGGACGTAGGAAACGCTTCCGTAAATGGATTACCCCTTGCTGTTT
CCGGCTTACACGCGTTAGATGCAATTGGGATGCCGGAGGGAAGGTTGATTCTTGCTCACGTGACTACATTTTTAGCCTCT
TGTCCAAAATCGAATGCGAGTTATAAGGGAATTGGTGCAGCCTTGGCTTTTGTTCGAAAGTACGGAACTGGAATCAAAAT
TCCGAACCGACTTCGAAACGCTCCTACCTTTCTGCATAAAAAAGAAGGTGCTTCGAAAGATTATATTTATCCTCACGATT
TTGGGGGATTTAAGGAACAAAATTATTTCCCGGATGAATTTGCCGAAAATCCGCCTAAGTTTTATTTTCCAACTGGGAAC
GGAGCGGAATTAAAATTGAAAGAATATCTGGACAAGATTTGGGAAAAAACTCCCTGGAAAAAAGGAAATTAA

Upstream 100 bases:

>100_bases
TTAGAGAACAATCTTTAGTCTGTTGTCATAGCGCTTGTGACGTATGTAACGCGACTATACGAACTTGTTTTCGTAAGATC
AAAAATGAATTGGAACTTTT

Downstream 100 bases:

>100_bases
TTATTTATCATAGAGTTCTGGACGAACGATTCTGATTTGTTTGGTTTTGGATTCTAAATTTTCTAGGTCAAATTCGATTG
AATTCCGATTTGAGTCCGAA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MSDLFTKKPIPPLAHKIRPSSFEEVIGQSKATKQLANYRFPVSIILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVA
EIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLILIGATTENPAFRITRPLLSRCQILKIEPLSLEEQSSL
LERGIQNIEYSINLNQDAKETLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAF
IKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALDAIGMPEGRLILAHVTTFLAS
CPKSNASYKGIGAALAFVRKYGTGIKIPNRLRNAPTFLHKKEGASKDYIYPHDFGGFKEQNYFPDEFAENPPKFYFPTGN
GAELKLKEYLDKIWEKTPWKKGN

Sequences:

>Translated_423_residues
MSDLFTKKPIPPLAHKIRPSSFEEVIGQSKATKQLANYRFPVSIILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVA
EIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLILIGATTENPAFRITRPLLSRCQILKIEPLSLEEQSSL
LERGIQNIEYSINLNQDAKETLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAF
IKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALDAIGMPEGRLILAHVTTFLAS
CPKSNASYKGIGAALAFVRKYGTGIKIPNRLRNAPTFLHKKEGASKDYIYPHDFGGFKEQNYFPDEFAENPPKFYFPTGN
GAELKLKEYLDKIWEKTPWKKGN
>Mature_422_residues
SDLFTKKPIPPLAHKIRPSSFEEVIGQSKATKQLANYRFPVSIILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVAE
IKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLILIGATTENPAFRITRPLLSRCQILKIEPLSLEEQSSLL
ERGIQNIEYSINLNQDAKETLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAFI
KSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALDAIGMPEGRLILAHVTTFLASC
PKSNASYKGIGAALAFVRKYGTGIKIPNRLRNAPTFLHKKEGASKDYIYPHDFGGFKEQNYFPDEFAENPPKFYFPTGNG
AELKLKEYLDKIWEKTPWKKGN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=431, Percent_Identity=37.3549883990719, Blast_Score=259, Evalue=2e-69,
Organism=Homo sapiens, GI18426904, Length=431, Percent_Identity=33.8747099767981, Blast_Score=215, Evalue=6e-56,
Organism=Escherichia coli, GI1787119, Length=440, Percent_Identity=36.1363636363636, Blast_Score=260, Evalue=1e-70,
Organism=Saccharomyces cerevisiae, GI6324111, Length=427, Percent_Identity=37.0023419203747, Blast_Score=253, Evalue=4e-68,
Organism=Saccharomyces cerevisiae, GI6324039, Length=263, Percent_Identity=26.9961977186312, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47012; Mature: 46881

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS50052 GUANYLATE_KINASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFTKKPIPPLAHKIRPSSFEEVIGQSKATKQLANYRFPVSIILYGPPGTGKSTLAGI
CCCCCCCCCCCHHHHHCCCCHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
LCRKWNLPFVEYNAVSTGVAEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETG
HHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHCCCCC
HLILIGATTENPAFRITRPLLSRCQILKIEPLSLEEQSSLLERGIQNIEYSINLNQDAKE
CEEEEEECCCCCCCEECHHHHCCCCEEEECCCCCHHHHHHHHHHHHCEEEEEECCCCHHH
TLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAF
HEEEECCCCHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALD
HHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHH
AIGMPEGRLILAHVTTFLASCPKSNASYKGIGAALAFVRKYGTGIKIPNRLRNAPTFLHK
HCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHH
KEGASKDYIYPHDFGGFKEQNYFPDEFAENPPKFYFPTGNGAELKLKEYLDKIWEKTPWK
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCEEHHHHHHHHHHCCCCC
KGN
CCC
>Mature Secondary Structure 
SDLFTKKPIPPLAHKIRPSSFEEVIGQSKATKQLANYRFPVSIILYGPPGTGKSTLAGI
CCCCCCCCCCHHHHHCCCCHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
LCRKWNLPFVEYNAVSTGVAEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETG
HHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHCCCCC
HLILIGATTENPAFRITRPLLSRCQILKIEPLSLEEQSSLLERGIQNIEYSINLNQDAKE
CEEEEEECCCCCCCEECHHHHCCCCEEEECCCCCHHHHHHHHHHHHCEEEEEECCCCHHH
TLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAF
HEEEECCCCHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALD
HHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHH
AIGMPEGRLILAHVTTFLASCPKSNASYKGIGAALAFVRKYGTGIKIPNRLRNAPTFLHK
HCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHH
KEGASKDYIYPHDFGGFKEQNYFPDEFAENPPKFYFPTGNGAELKLKEYLDKIWEKTPWK
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCEEHHHHHHHHHHCCCCC
KGN
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]