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The map label for this gene is 45658247

Identifier: 45658247

GI number: 45658247

Start: 2909058

End: 2909711

Strand: Reverse

Name: 45658247

Synonym: LIC12401

Alternate gene names: NA

Gene position: 2909711-2909058 (Counterclockwise)

Preceding gene: 45658248

Following gene: 45658246

Centisome position: 68.03

GC content: 32.26

Gene sequence:

>654_bases
ATGAATTTCCTATCTTTAAAAAAAATCTTTAAGCTCTATTTCTTTCTTTGGGTTTCGTTTTTTGGGATCGATTGTAAAAA
AAACGCGGTAGAGATTTTAGAAGAAGCAAAAAGAAAATCGGAATCGATTCAAATCTTAGATTTAGGAATGCAAAAGTTAA
CCTCGATTCCAGAAGGAGTTTGCTCTTTTCCGAATTTGACTCAGCTGGATTTACGTTTGAACAGTTTGAATTCTCTTCCT
GGTTGGATTGGAGCTTGTAAAAATCTGGAACAAATTAACCTTTTCGGAAATGATCTAAATACGGTTCCATCTTCTTTTTC
TAAATTAAAGAATTTGAAAGTATTACTCTTGGGTAATAACGATTTTACTTTTCTACCTTCGGAACTTTTGTTTCTGCCTT
TGCTTAAAACCCTGTATTTGGATCAAAACAAGCTTACGTTGACTGAAACGGATGTTGAAATTCTAGCTTCTCTTTCCAGT
TTGGAAGAATTGGATCTTAATTTGAACTCTGGAATCAAAGTGCTTCCTTCTAACTATAATAAATTGAAAAATCTGACTCA
TTTAAAAAGATTGAATATTAAAAAAACTTCATTAAAGGGGGAGGATGCTGATAAATTACAAGCAGTTCTCCCAAATACAA
GAATAGACTATTGA

Upstream 100 bases:

>100_bases
AATCAAAGACGCCGAAATTAAAATTTCTTTCCAGGAATTGAGCGGACCTTATGAAAAAGGTTTAGAGGCGGTTTTTGCAT
TATAAAAAAGGATCAAACCA

Downstream 100 bases:

>100_bases
TACAACTATGAGCGAAACCCAAAAAGAAAATCCTTATTCTTCCACGGTTCTTCTTCCGAAAACCGATTTCCCGATGAAAG
CAGATCTGGCCAAAAGAGAA

Product: cytoplasmic membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNFLSLKKIFKLYFFLWVSFFGIDCKKNAVEILEEAKRKSESIQILDLGMQKLTSIPEGVCSFPNLTQLDLRLNSLNSLP
GWIGACKNLEQINLFGNDLNTVPSSFSKLKNLKVLLLGNNDFTFLPSELLFLPLLKTLYLDQNKLTLTETDVEILASLSS
LEELDLNLNSGIKVLPSNYNKLKNLTHLKRLNIKKTSLKGEDADKLQAVLPNTRIDY

Sequences:

>Translated_217_residues
MNFLSLKKIFKLYFFLWVSFFGIDCKKNAVEILEEAKRKSESIQILDLGMQKLTSIPEGVCSFPNLTQLDLRLNSLNSLP
GWIGACKNLEQINLFGNDLNTVPSSFSKLKNLKVLLLGNNDFTFLPSELLFLPLLKTLYLDQNKLTLTETDVEILASLSS
LEELDLNLNSGIKVLPSNYNKLKNLTHLKRLNIKKTSLKGEDADKLQAVLPNTRIDY
>Mature_217_residues
MNFLSLKKIFKLYFFLWVSFFGIDCKKNAVEILEEAKRKSESIQILDLGMQKLTSIPEGVCSFPNLTQLDLRLNSLNSLP
GWIGACKNLEQINLFGNDLNTVPSSFSKLKNLKVLLLGNNDFTFLPSELLFLPLLKTLYLDQNKLTLTETDVEILASLSS
LEELDLNLNSGIKVLPSNYNKLKNLTHLKRLNIKKTSLKGEDADKLQAVLPNTRIDY

Specific function: Unknown

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI45827729, Length=155, Percent_Identity=32.9032258064516, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI45827731, Length=155, Percent_Identity=32.9032258064516, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI63003903, Length=169, Percent_Identity=34.9112426035503, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI291219891, Length=171, Percent_Identity=28.6549707602339, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI55770895, Length=166, Percent_Identity=31.9277108433735, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI8923909, Length=166, Percent_Identity=31.9277108433735, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI110825984, Length=164, Percent_Identity=32.3170731707317, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI41281398, Length=168, Percent_Identity=33.9285714285714, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI61742784, Length=118, Percent_Identity=33.0508474576271, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI61742786, Length=118, Percent_Identity=33.0508474576271, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI21361633, Length=137, Percent_Identity=37.2262773722628, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI40217803, Length=142, Percent_Identity=33.0985915492958, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI6912638, Length=122, Percent_Identity=36.8852459016393, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI34577083, Length=122, Percent_Identity=36.8852459016393, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI95113664, Length=172, Percent_Identity=33.7209302325581, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17552452, Length=157, Percent_Identity=33.7579617834395, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71993778, Length=164, Percent_Identity=33.5365853658537, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71991525, Length=162, Percent_Identity=32.0987654320988, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71991531, Length=162, Percent_Identity=32.0987654320988, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71993783, Length=164, Percent_Identity=33.5365853658537, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71981160, Length=165, Percent_Identity=35.1515151515151, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71981152, Length=162, Percent_Identity=35.1851851851852, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007092, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24650334, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24650332, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI62472958, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24650330, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281362657, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281362655, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281362651, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281362653, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24650336, Length=187, Percent_Identity=32.620320855615, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19922294, Length=162, Percent_Identity=32.0987654320988, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45550188, Length=139, Percent_Identity=30.9352517985612, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24582; Mature: 24582

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFLSLKKIFKLYFFLWVSFFGIDCKKNAVEILEEAKRKSESIQILDLGMQKLTSIPEGV
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEHHHHHHHHHHCCCHHH
CSFPNLTQLDLRLNSLNSLPGWIGACKNLEQINLFGNDLNTVPSSFSKLKNLKVLLLGNN
HCCCCCEEEHEEHHHHCCCCHHHHHHCCCHHEEECCCCHHHHHHHHHHHCCCEEEEECCC
DFTFLPSELLFLPLLKTLYLDQNKLTLTETDVEILASLSSLEELDLNLNSGIKVLPSNYN
CCEECHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHH
KLKNLTHLKRLNIKKTSLKGEDADKLQAVLPNTRIDY
HHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNFLSLKKIFKLYFFLWVSFFGIDCKKNAVEILEEAKRKSESIQILDLGMQKLTSIPEGV
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEHHHHHHHHHHCCCHHH
CSFPNLTQLDLRLNSLNSLPGWIGACKNLEQINLFGNDLNTVPSSFSKLKNLKVLLLGNN
HCCCCCEEEHEEHHHHCCCCHHHHHHCCCHHEEECCCCHHHHHHHHHHHCCCEEEEECCC
DFTFLPSELLFLPLLKTLYLDQNKLTLTETDVEILASLSSLEELDLNLNSGIKVLPSNYN
CCEECHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHH
KLKNLTHLKRLNIKKTSLKGEDADKLQAVLPNTRIDY
HHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA