Click here to switch to the map view.

The map label for this gene is 45658063

Identifier: 45658063

GI number: 45658063

Start: 2671711

End: 2672304

Strand: Reverse

Name: 45658063

Synonym: LIC12214

Alternate gene names: NA

Gene position: 2672304-2671711 (Counterclockwise)

Preceding gene: 45658064

Following gene: 45658062

Centisome position: 62.48

GC content: 36.53

Gene sequence:

>594_bases
TTGAAAGAAAGAATTTTATTGATCTCCATTTTAATTTTAGGGATTATACTTGGGTTTTTTGGTTGGAAAGCGTGGAAAGG
AAGATCTTCGATTCAAGAACCTGTTTTTGTAGAAGAATGGTCTCAGATTACTTTGAAAAACACTCAAAATCTTGGAATTC
CTTTAAACAAAATTCCAGGTAAATTGAAACTAGTCTATTTCGGATTTTCGCATTGTCCGGATATGTGCCCAAGAGCATTG
ATAGATATGTCTTTGGCTGTTAAGGAACTAGGAGACCAAGGAAAAAATCTAACTCCAGTATTTATTAGTGTAGATCCGAA
AAGAGATACACCGTCATTACTTGCAAAATATGTAAGACAGTTTCCTGAAGAAAGGCTTGTCGCTTTAACGGGCGAAAAAT
CTAAACTAGATTCTTTGCAAAATGCGTTTGGGGCCGTGTCTAAAAAGGTCGACGCGCCTCAGCTGGAAGGAGGATATACG
GTGGATCATACTGTTTTTATTTATGTTTTAGATGATAAAAGTAGGATTTTAATGACTTTTCCGGGAGGGATGGACGGAAA
GACTCTCGCTAAAGAAATTAGACGTTTTCTTTAA

Upstream 100 bases:

>100_bases
ACGTATCGATGTGAAAGTGTTGAAGGAAGTAAATTCTGGATCTAAAAGTTGGATTTGCCTCTAAGTTTAAAATGTTCTAA
TACACATTCAGGAAAATATT

Downstream 100 bases:

>100_bases
GATTCAATTTAATTTTACTATTGTAAGGTTTTACTTGTGACTGCTTCTTACTTAAGACAATCGAGAAGTATTTTATCAGT
TTGAGAAAATACTTGAACGC

Product: putative cytochrome oxidase assembly factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MKERILLISILILGIILGFFGWKAWKGRSSIQEPVFVEEWSQITLKNTQNLGIPLNKIPGKLKLVYFGFSHCPDMCPRAL
IDMSLAVKELGDQGKNLTPVFISVDPKRDTPSLLAKYVRQFPEERLVALTGEKSKLDSLQNAFGAVSKKVDAPQLEGGYT
VDHTVFIYVLDDKSRILMTFPGGMDGKTLAKEIRRFL

Sequences:

>Translated_197_residues
MKERILLISILILGIILGFFGWKAWKGRSSIQEPVFVEEWSQITLKNTQNLGIPLNKIPGKLKLVYFGFSHCPDMCPRAL
IDMSLAVKELGDQGKNLTPVFISVDPKRDTPSLLAKYVRQFPEERLVALTGEKSKLDSLQNAFGAVSKKVDAPQLEGGYT
VDHTVFIYVLDDKSRILMTFPGGMDGKTLAKEIRRFL
>Mature_197_residues
MKERILLISILILGIILGFFGWKAWKGRSSIQEPVFVEEWSQITLKNTQNLGIPLNKIPGKLKLVYFGFSHCPDMCPRAL
IDMSLAVKELGDQGKNLTPVFISVDPKRDTPSLLAKYVRQFPEERLVALTGEKSKLDSLQNAFGAVSKKVDAPQLEGGYT
VDHTVFIYVLDDKSRILMTFPGGMDGKTLAKEIRRFL

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=123, Percent_Identity=38.2113821138211, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI281182727, Length=140, Percent_Identity=30.7142857142857, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI281182722, Length=140, Percent_Identity=30.7142857142857, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI281182716, Length=140, Percent_Identity=30.7142857142857, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI153791313, Length=140, Percent_Identity=30.7142857142857, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17531419, Length=137, Percent_Identity=34.3065693430657, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6319498, Length=139, Percent_Identity=31.6546762589928, Blast_Score=89, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6319511, Length=173, Percent_Identity=31.2138728323699, Blast_Score=82, Evalue=6e-17,
Organism=Drosophila melanogaster, GI19920710, Length=114, Percent_Identity=38.5964912280702, Blast_Score=85, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22113; Mature: 22113

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERILLISILILGIILGFFGWKAWKGRSSIQEPVFVEEWSQITLKNTQNLGIPLNKIPG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHEEEECCCCCCCCCHHHCCC
KLKLVYFGFSHCPDMCPRALIDMSLAVKELGDQGKNLTPVFISVDPKRDTPSLLAKYVRQ
EEEEEEECCHHCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
FPEERLVALTGEKSKLDSLQNAFGAVSKKVDAPQLEGGYTVDHTVFIYVLDDKSRILMTF
CCHHHEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCEEEEEEEECCCEEEEEC
PGGMDGKTLAKEIRRFL
CCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MKERILLISILILGIILGFFGWKAWKGRSSIQEPVFVEEWSQITLKNTQNLGIPLNKIPG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHEEEECCCCCCCCCHHHCCC
KLKLVYFGFSHCPDMCPRALIDMSLAVKELGDQGKNLTPVFISVDPKRDTPSLLAKYVRQ
EEEEEEECCHHCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
FPEERLVALTGEKSKLDSLQNAFGAVSKKVDAPQLEGGYTVDHTVFIYVLDDKSRILMTF
CCHHHEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCEEEEEEEECCCEEEEEC
PGGMDGKTLAKEIRRFL
CCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]