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The map label for this gene is 45657994

Identifier: 45657994

GI number: 45657994

Start: 2596030

End: 2596893

Strand: Reverse

Name: 45657994

Synonym: LIC12146

Alternate gene names: NA

Gene position: 2596893-2596030 (Counterclockwise)

Preceding gene: 45657995

Following gene: 45657993

Centisome position: 60.72

GC content: 32.29

Gene sequence:

>864_bases
ATGTCTTTTTTTCATAAAATTTTAGCAGGTTCTCATATTCCTTTAAGAATATTTAATATTTTTGGACGTACTTTAAAAAT
TAAGGATGGGTCTGAGTTAAGGGTTTTATTATATCATGATATTCCTCAAGAACACCATTCTCGTTTTCGCACGCAGTTAG
AAAAAATTTCTAAAGATTGGAGATTTGTTTCTACTGAGATTTTTGAGGAAATGATTCGTGGAAAAAAAGAAATTGTGGGT
CGAAATCTTTTGCTGACTTTTGACGATGGTTACCTTTCCAATAAAATCGTCGCGGAAGAAATTTTAGAACCTTTAGGAAT
AAAAGCTTTATTTTTTATCATTTCAGATTTTGTAGATATTCAGGATACCCAAATAAAAAAATTTATATCAGATAATATTT
ATCCAAGTTTGAGTATAAAACAGGTTCCAGATTTTTGGATGCCTATGCGTTGGAAAGATTTGGAGGTATTATTGCAAAAG
GGACATTCTATAGGAGGTCATACAAAAACACATGCCAAACTTTCACAAATTGATTCGATTGATAGACTTCAAGACGAAAT
ACTAATTTCCAAAAAGAAATTGGAAGATAAACTAGAAATAAATATTAAACATTTTGCATATACTTTTGGCGACTTGGACA
GTTTTAGCAAGGATGCCTTGACGGTAGCAAGGAAGCATTATGAGTTTATTCACACAGGCTTGCGTGGAAATAATAAAATT
TCTCCTAATTCTAATTGGGCAATTCGTAGAGAATCGATTTCGCCTACTGATTCAGATCATTTGGTAGGGTCAATTTTGGA
GGGTGGGGCGGATATCCTTTATAAGAATAAGTTAAGAACTTATGAGTCTTGGGGATTGTTTTAA

Upstream 100 bases:

>100_bases
TTGGGAATCTTAGATTATTATTATTCTAAAATATATGGTTTAAATACACTTTTAGCTCGCCAGAAAAATTTTGCGGCGAT
TTGTAGATAGTTTTAATTGA

Downstream 100 bases:

>100_bases
TGCACTTATTTGCGCCTCTACCAAGTTGGAAGAATTTATTTTCTATTTTATCTTTTAAGAATATAGATCAGAAGTCTATT
TCAAAAATATGGCTAACTTC

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: Deacetylase; Xylanase/Chitin Deacetylase; Polysaccharide Deacetylase-Like Protein; Polysaccharide Deacetylase Family Protein

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSFFHKILAGSHIPLRIFNIFGRTLKIKDGSELRVLLYHDIPQEHHSRFRTQLEKISKDWRFVSTEIFEEMIRGKKEIVG
RNLLLTFDDGYLSNKIVAEEILEPLGIKALFFIISDFVDIQDTQIKKFISDNIYPSLSIKQVPDFWMPMRWKDLEVLLQK
GHSIGGHTKTHAKLSQIDSIDRLQDEILISKKKLEDKLEINIKHFAYTFGDLDSFSKDALTVARKHYEFIHTGLRGNNKI
SPNSNWAIRRESISPTDSDHLVGSILEGGADILYKNKLRTYESWGLF

Sequences:

>Translated_287_residues
MSFFHKILAGSHIPLRIFNIFGRTLKIKDGSELRVLLYHDIPQEHHSRFRTQLEKISKDWRFVSTEIFEEMIRGKKEIVG
RNLLLTFDDGYLSNKIVAEEILEPLGIKALFFIISDFVDIQDTQIKKFISDNIYPSLSIKQVPDFWMPMRWKDLEVLLQK
GHSIGGHTKTHAKLSQIDSIDRLQDEILISKKKLEDKLEINIKHFAYTFGDLDSFSKDALTVARKHYEFIHTGLRGNNKI
SPNSNWAIRRESISPTDSDHLVGSILEGGADILYKNKLRTYESWGLF
>Mature_286_residues
SFFHKILAGSHIPLRIFNIFGRTLKIKDGSELRVLLYHDIPQEHHSRFRTQLEKISKDWRFVSTEIFEEMIRGKKEIVGR
NLLLTFDDGYLSNKIVAEEILEPLGIKALFFIISDFVDIQDTQIKKFISDNIYPSLSIKQVPDFWMPMRWKDLEVLLQKG
HSIGGHTKTHAKLSQIDSIDRLQDEILISKKKLEDKLEINIKHFAYTFGDLDSFSKDALTVARKHYEFIHTGLRGNNKIS
PNSNWAIRRESISPTDSDHLVGSILEGGADILYKNKLRTYESWGLF

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33318; Mature: 33187

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFHKILAGSHIPLRIFNIFGRTLKIKDGSELRVLLYHDIPQEHHSRFRTQLEKISKDW
CCHHHHHHCCCCCCCHHEECCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
RFVSTEIFEEMIRGKKEIVGRNLLLTFDDGYLSNKIVAEEILEPLGIKALFFIISDFVDI
HHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QDTQIKKFISDNIYPSLSIKQVPDFWMPMRWKDLEVLLQKGHSIGGHTKTHAKLSQIDSI
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
DRLQDEILISKKKLEDKLEINIKHFAYTFGDLDSFSKDALTVARKHYEFIHTGLRGNNKI
HHHHHHHHHHHHHCCHHHEEEEHHHEEECCCHHHCHHHHHHHHHHHHHHHHHCCCCCCCC
SPNSNWAIRRESISPTDSDHLVGSILEGGADILYKNKLRTYESWGLF
CCCCCCEEEECCCCCCCCHHHHHHHHHCCHHEEEHHHHHHHHHCCCC
>Mature Secondary Structure 
SFFHKILAGSHIPLRIFNIFGRTLKIKDGSELRVLLYHDIPQEHHSRFRTQLEKISKDW
CHHHHHHCCCCCCCHHEECCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
RFVSTEIFEEMIRGKKEIVGRNLLLTFDDGYLSNKIVAEEILEPLGIKALFFIISDFVDI
HHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QDTQIKKFISDNIYPSLSIKQVPDFWMPMRWKDLEVLLQKGHSIGGHTKTHAKLSQIDSI
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
DRLQDEILISKKKLEDKLEINIKHFAYTFGDLDSFSKDALTVARKHYEFIHTGLRGNNKI
HHHHHHHHHHHHHCCHHHEEEEHHHEEECCCHHHCHHHHHHHHHHHHHHHHHCCCCCCCC
SPNSNWAIRRESISPTDSDHLVGSILEGGADILYKNKLRTYESWGLF
CCCCCCEEEECCCCCCCCHHHHHHHHHCCHHEEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA