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The map label for this gene is yibD [C]

Identifier: 45657976

GI number: 45657976

Start: 2571788

End: 2572609

Strand: Reverse

Name: yibD [C]

Synonym: LIC12128

Alternate gene names: 45657976

Gene position: 2572609-2571788 (Counterclockwise)

Preceding gene: 45657977

Following gene: 45657975

Centisome position: 60.15

GC content: 33.94

Gene sequence:

>822_bases
ATGTATAATACTCCTATTGTTTCTGTGATCATACCGTGCTATAACTACGGGAAATACATTGAACAAGCGATTCAAAGTAT
ACTCGAACAGAGTTATAAGAATTGGGAAATTATAGTCGTAGACGACGGATCTGATGATGAGTATACGATCGAAAAACTAG
AGGAACTCAAAAAAGAATATGCGGTAATTAAAATTGACCGATCTGGTCCAGCCGTGGCCAGAAATGTAGGAATCGAAGCA
GCCAAAGGAAAGTTCATCTTACCATTAGATTCAGACGATACAATTCATTCGGATTATCTTTTAGAAGCAATTTCTGCTTA
TGAAAAAAAACCATCCTTAGGAATTGTATATTGTGAAGCTGAATTTTTTGGCTCTATGAAAGGAAGATGGAATCTTCCGA
AATATAGTTTTCCGGAAATACTTTTAGACAATTGTATATTCGTATCAGCAGTGTTTAGAAAATCGGATTGGAAAGAGGTT
GGCGGATTTAATGGAAACATGAAAAACGAATGGGAAGATTATGACTTTTGGCTTTCGTTGATTGAAAAAGGAAGGGACGT
TTATAAAATACCTCGAGTAATGTTTTATTATAGAAGAGGTCACGTATCTCGCTCTAGCAGATCTATTGAAACGTATTTAC
CTCTTTATTTACAGTTATTTAAGAATCATAAACGTTTATATACTGAAAACATTGAAGTTCTGTTTAAGCGTCATTTAAAG
GCAAGAGAATTAGAAGAACAGTTCTCAATACTAACTAAAAACCCAATCATTTACGGAATCGTAAGATTTTTAGTCAGTTG
TCTTAAGTTTTTTGCAAAGTGA

Upstream 100 bases:

>100_bases
GGAATTTTTCAACAACTCTATTTAATTTTGGAAATTACTACTTTTAAAAATTTTTTAAACCTAATATTTATAAATATTTT
TATTTCTGAATATTCTAAAA

Downstream 100 bases:

>100_bases
AATTCATAAATAAAAAAGTTTAGGCATTTCTGCATCATAAATTAGTATAAAATAAAATTCTTATATATAAAGTACAGGTT
GGAGCCTCTCCACTCTAGTC

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MYNTPIVSVIIPCYNYGKYIEQAIQSILEQSYKNWEIIVVDDGSDDEYTIEKLEELKKEYAVIKIDRSGPAVARNVGIEA
AKGKFILPLDSDDTIHSDYLLEAISAYEKKPSLGIVYCEAEFFGSMKGRWNLPKYSFPEILLDNCIFVSAVFRKSDWKEV
GGFNGNMKNEWEDYDFWLSLIEKGRDVYKIPRVMFYYRRGHVSRSSRSIETYLPLYLQLFKNHKRLYTENIEVLFKRHLK
ARELEEQFSILTKNPIIYGIVRFLVSCLKFFAK

Sequences:

>Translated_273_residues
MYNTPIVSVIIPCYNYGKYIEQAIQSILEQSYKNWEIIVVDDGSDDEYTIEKLEELKKEYAVIKIDRSGPAVARNVGIEA
AKGKFILPLDSDDTIHSDYLLEAISAYEKKPSLGIVYCEAEFFGSMKGRWNLPKYSFPEILLDNCIFVSAVFRKSDWKEV
GGFNGNMKNEWEDYDFWLSLIEKGRDVYKIPRVMFYYRRGHVSRSSRSIETYLPLYLQLFKNHKRLYTENIEVLFKRHLK
ARELEEQFSILTKNPIIYGIVRFLVSCLKFFAK
>Mature_273_residues
MYNTPIVSVIIPCYNYGKYIEQAIQSILEQSYKNWEIIVVDDGSDDEYTIEKLEELKKEYAVIKIDRSGPAVARNVGIEA
AKGKFILPLDSDDTIHSDYLLEAISAYEKKPSLGIVYCEAEFFGSMKGRWNLPKYSFPEILLDNCIFVSAVFRKSDWKEV
GGFNGNMKNEWEDYDFWLSLIEKGRDVYKIPRVMFYYRRGHVSRSSRSIETYLPLYLQLFKNHKRLYTENIEVLFKRHLK
ARELEEQFSILTKNPIIYGIVRFLVSCLKFFAK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=165, Percent_Identity=29.0909090909091, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787259, Length=209, Percent_Identity=26.7942583732057, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788372, Length=235, Percent_Identity=24.2553191489362, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 32040; Mature: 32040

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNTPIVSVIIPCYNYGKYIEQAIQSILEQSYKNWEIIVVDDGSDDEYTIEKLEELKKEY
CCCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
AVIKIDRSGPAVARNVGIEAAKGKFILPLDSDDTIHSDYLLEAISAYEKKPSLGIVYCEA
EEEEECCCCCHHHHHCCCEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEH
EFFGSMKGRWNLPKYSFPEILLDNCIFVSAVFRKSDWKEVGGFNGNMKNEWEDYDFWLSL
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHH
IEKGRDVYKIPRVMFYYRRGHVSRSSRSIETYLPLYLQLFKNHKRLYTENIEVLFKRHLK
HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARELEEQFSILTKNPIIYGIVRFLVSCLKFFAK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYNTPIVSVIIPCYNYGKYIEQAIQSILEQSYKNWEIIVVDDGSDDEYTIEKLEELKKEY
CCCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
AVIKIDRSGPAVARNVGIEAAKGKFILPLDSDDTIHSDYLLEAISAYEKKPSLGIVYCEA
EEEEECCCCCHHHHHCCCEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEH
EFFGSMKGRWNLPKYSFPEILLDNCIFVSAVFRKSDWKEVGGFNGNMKNEWEDYDFWLSL
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHH
IEKGRDVYKIPRVMFYYRRGHVSRSSRSIETYLPLYLQLFKNHKRLYTENIEVLFKRHLK
HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARELEEQFSILTKNPIIYGIVRFLVSCLKFFAK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]