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The map label for this gene is ygaD [C]

Identifier: 45657949

GI number: 45657949

Start: 2541262

End: 2542518

Strand: Reverse

Name: ygaD [C]

Synonym: LIC12101

Alternate gene names: 45657949

Gene position: 2542518-2541262 (Counterclockwise)

Preceding gene: 45657950

Following gene: 45657948

Centisome position: 59.44

GC content: 38.66

Gene sequence:

>1257_bases
ATGTTTTCTCCTAAGATCATCATATTATCCACTGGTTCCGAACTTACTTCTGGAAGAAGTCAAGATACAAATTCCTCATG
GATCGCAAACGAACTTTTTGGGATTGGATTTACAGTTTCCAAATTAGTCGTTTTACCCGATGATCCAGAAGCAATTTTAG
AGGAGCTAAGAACGTTAGTCTCTCTTGCTACAAAGAAGAATCCTGTTCTACTAATTATGACCGGAGGATTGGGGCCGACG
GAAGACGATTATACTCTAGAAGTGGTTTGTAAGTTAAAGGGAGTGTCTTCCGTGGAAAGTGTTGTCGCAAGACAAAGGAT
AGAGGCGTTTTATAAATTACGTGGAAAAAATTTTCAAGAATCGCTACAGACTGCGATTCGCCAAATATCCGTACCAAAAG
ACTCTACGATTTTAAACAATGAAGTTGGAATTGCGCCAGGTTTTATCGTATCTCTTGGAGAAAACGTACATTTAGGATGT
ATGCCCGGGGTACCTGGAGAAATGACTGAAATGTTTCGAGAGGAGTTTTCTACTTGGATTCTAAAGAAATATTCCACACG
GGAATTACACTCAGGTTTTCGATTTATTTGGTGGATGAGTGAATCTCAGTTTCAGAAAGAATTTATATCTAAAGAAGAGT
CCGTGACGAGTGGAAAAGTTATATGGGGAGTAGCGGCTAAAAGGGGATATATCCGTGTTAGCTTTCAATCCAACGAACGA
GCGTTAGTTGATTTTTTGCTCAAAAAGTTAGATGAGATATATGGACCCAAATCTACACTGGATGTGTTTGAAGAACTTCC
AAAACTATTGATCGAAAAAAAAATCACAGTAGGAACGGCAGAAAGTTGTACTGGAGGATTAATTTCCAAAATATTTACGG
ATAAACCTGGATCTTCAACTTATTTTTATGGAGGAGTAATTTCCTACGATAACGGAGTGAAAGAAGGGATTTTAGGAGTT
AAAAAAAATACTCTAAAAGAGTTTGGGGCCGTCAGTATGGAAACCGCAAAAGAAATGGCAGAAGGAGCGTTAGTCGCTCT
TGGTGTTGATTATTCTATTAGTGTTACTGGAATTGCCGGACCAGGTGGAGGAACTCCACAAAAAAAAGTGGGACTTGTAT
ATTTTGGGATCGGACAAAAAAATGAGAAAACGGAAACTCACGAACATTACTTTCCTTTTCCTAGAAGCTCTTTCCGAGAA
TTTGCGGCTCATACCGGAATTTATCTTTTATACAATCGTTTAAAGAGGTTGGCATGA

Upstream 100 bases:

>100_bases
TAGGATTGGCTAGGATATGTCTCGCCGCTAAAAATGTACTCGCCGAAGGGCTAAAGTTGATTGGAGTTTCCGCGCCGGAA
AGGATGGAAAAAGAAAACTG

Downstream 100 bases:

>100_bases
GACTGTTATCTGTAGTTGGATTCGGTTTATTTTTTTTAATATTGTTTTTTTATTTTCTGGGGAATCCGTATCCTACAGCC
ATAGGAATACAGAAAGTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MFSPKIIILSTGSELTSGRSQDTNSSWIANELFGIGFTVSKLVVLPDDPEAILEELRTLVSLATKKNPVLLIMTGGLGPT
EDDYTLEVVCKLKGVSSVESVVARQRIEAFYKLRGKNFQESLQTAIRQISVPKDSTILNNEVGIAPGFIVSLGENVHLGC
MPGVPGEMTEMFREEFSTWILKKYSTRELHSGFRFIWWMSESQFQKEFISKEESVTSGKVIWGVAAKRGYIRVSFQSNER
ALVDFLLKKLDEIYGPKSTLDVFEELPKLLIEKKITVGTAESCTGGLISKIFTDKPGSSTYFYGGVISYDNGVKEGILGV
KKNTLKEFGAVSMETAKEMAEGALVALGVDYSISVTGIAGPGGGTPQKKVGLVYFGIGQKNEKTETHEHYFPFPRSSFRE
FAAHTGIYLLYNRLKRLA

Sequences:

>Translated_418_residues
MFSPKIIILSTGSELTSGRSQDTNSSWIANELFGIGFTVSKLVVLPDDPEAILEELRTLVSLATKKNPVLLIMTGGLGPT
EDDYTLEVVCKLKGVSSVESVVARQRIEAFYKLRGKNFQESLQTAIRQISVPKDSTILNNEVGIAPGFIVSLGENVHLGC
MPGVPGEMTEMFREEFSTWILKKYSTRELHSGFRFIWWMSESQFQKEFISKEESVTSGKVIWGVAAKRGYIRVSFQSNER
ALVDFLLKKLDEIYGPKSTLDVFEELPKLLIEKKITVGTAESCTGGLISKIFTDKPGSSTYFYGGVISYDNGVKEGILGV
KKNTLKEFGAVSMETAKEMAEGALVALGVDYSISVTGIAGPGGGTPQKKVGLVYFGIGQKNEKTETHEHYFPFPRSSFRE
FAAHTGIYLLYNRLKRLA
>Mature_418_residues
MFSPKIIILSTGSELTSGRSQDTNSSWIANELFGIGFTVSKLVVLPDDPEAILEELRTLVSLATKKNPVLLIMTGGLGPT
EDDYTLEVVCKLKGVSSVESVVARQRIEAFYKLRGKNFQESLQTAIRQISVPKDSTILNNEVGIAPGFIVSLGENVHLGC
MPGVPGEMTEMFREEFSTWILKKYSTRELHSGFRFIWWMSESQFQKEFISKEESVTSGKVIWGVAAKRGYIRVSFQSNER
ALVDFLLKKLDEIYGPKSTLDVFEELPKLLIEKKITVGTAESCTGGLISKIFTDKPGSSTYFYGGVISYDNGVKEGILGV
KKNTLKEFGAVSMETAKEMAEGALVALGVDYSISVTGIAGPGGGTPQKKVGLVYFGIGQKNEKTETHEHYFPFPRSSFRE
FAAHTGIYLLYNRLKRLA

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family

Homologues:

Organism=Escherichia coli, GI1789052, Length=155, Percent_Identity=38.0645161290323, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788583, Length=181, Percent_Identity=30.939226519337, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787818, Length=125, Percent_Identity=32, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CINAL_LEPIC (Q72QL2)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_002035.1
- ProteinModelPortal:   Q72QL2
- SMR:   Q72QL2
- GeneID:   2771294
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC12101
- NMPDR:   fig|267671.1.peg.2035
- HOGENOM:   HBG449871
- OMA:   NPTVAPY
- ProtClustDB:   CLSK574018
- BioCyc:   LINT267671:LIC_12101-MONOMER
- HAMAP:   MF_00226_B
- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453
- Gene3D:   G3DSA:3.40.980.10
- PIRSF:   PIRSF006728
- SMART:   SM00852
- TIGRFAMs:   TIGR00199
- TIGRFAMs:   TIGR00200

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth; SSF53218 MoCF_biosynth

EC number: NA

Molecular weight: Translated: 46144; Mature: 46144

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSPKIIILSTGSELTSGRSQDTNSSWIANELFGIGFTVSKLVVLPDDPEAILEELRTLV
CCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHH
SLATKKNPVLLIMTGGLGPTEDDYTLEVVCKLKGVSSVESVVARQRIEAFYKLRGKNFQE
HHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHH
SLQTAIRQISVPKDSTILNNEVGIAPGFIVSLGENVHLGCMPGVPGEMTEMFREEFSTWI
HHHHHHHHCCCCCCCCEECCCCCCCCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHHHH
LKKYSTRELHSGFRFIWWMSESQFQKEFISKEESVTSGKVIWGVAAKRGYIRVSFQSNER
HHHCCHHHHHCCCEEEEEECHHHHHHHHHCHHCCCCCCCEEEEEECCCCEEEEEEECCCH
ALVDFLLKKLDEIYGPKSTLDVFEELPKLLIEKKITVGTAESCTGGLISKIFTDKPGSST
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCE
YFYGGVISYDNGVKEGILGVKKNTLKEFGAVSMETAKEMAEGALVALGVDYSISVTGIAG
EEECCEEECCCCHHHHHHHCHHHHHHHHCCCHHHHHHHHHCCCEEEEECCEEEEEEEECC
PGGGTPQKKVGLVYFGIGQKNEKTETHEHYFPFPRSSFREFAAHTGIYLLYNRLKRLA
CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MFSPKIIILSTGSELTSGRSQDTNSSWIANELFGIGFTVSKLVVLPDDPEAILEELRTLV
CCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHH
SLATKKNPVLLIMTGGLGPTEDDYTLEVVCKLKGVSSVESVVARQRIEAFYKLRGKNFQE
HHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHH
SLQTAIRQISVPKDSTILNNEVGIAPGFIVSLGENVHLGCMPGVPGEMTEMFREEFSTWI
HHHHHHHHCCCCCCCCEECCCCCCCCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHHHH
LKKYSTRELHSGFRFIWWMSESQFQKEFISKEESVTSGKVIWGVAAKRGYIRVSFQSNER
HHHCCHHHHHCCCEEEEEECHHHHHHHHHCHHCCCCCCCEEEEEECCCCEEEEEEECCCH
ALVDFLLKKLDEIYGPKSTLDVFEELPKLLIEKKITVGTAESCTGGLISKIFTDKPGSST
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCE
YFYGGVISYDNGVKEGILGVKKNTLKEFGAVSMETAKEMAEGALVALGVDYSISVTGIAG
EEECCEEECCCCHHHHHHHCHHHHHHHHCCCHHHHHHHHHCCCEEEEECCEEEEEEEECC
PGGGTPQKKVGLVYFGIGQKNEKTETHEHYFPFPRSSFREFAAHTGIYLLYNRLKRLA
CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA