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The map label for this gene is yoaA

Identifier: 45657871

GI number: 45657871

Start: 2432866

End: 2434842

Strand: Direct

Name: yoaA

Synonym: LIC12019

Alternate gene names: 45657871

Gene position: 2432866-2434842 (Clockwise)

Preceding gene: 45657870

Following gene: 45657872

Centisome position: 56.88

GC content: 37.18

Gene sequence:

>1977_bases
TTGAACCGTTCTTTAGAATATTTTGATAAACTTTCTTCTCTTTGGGACGATTTTGAGCCTAGAAAAGTACAAATCCAACT
TTCTCAAAAAATTGAAGATTCTCTTTATAATGGAACCCATTTGATCGCAGAGGCAGGCACCGGAGTCGGTAAATCCCTTG
CTTATTTGATTCCTGCAGCTCTCATTTCGATCGAAACAGAAGAACCAGTAGTTATTTCCACAGAAACTAAATCCCTCCAA
CAACAACTTCTTTCCAAAGACATTCCTATGGTTTCTAAAATTTTAGGAATTGATCTAAAAGCAGAAGTGGCAATGGGTGC
TTCCAATTACGTTTGTAAACGTAAAATGAATCACGTTTTTAGAGATGGAACCTTTGGTCCGGAAATGATTCCTCATTTGG
ATTCTTTCAACCAATGGATTCAAAACACTGAGTCGGGTCGAAAACAGGAATTTAATGGAACTGCTTCTTATGATTTTTGG
AATCGAATTACAAGAGAAGCGGATAATTGTTTGGGAAGAAATTGTCCTAACTTTTCTCATTCCTTTTATTTTTTAGAAAG
AGAGAAATGGAAACGTTCTAATATACTAATTATCAATCATCATCTTTTAGCAGCTCATATCGCAAGTGATTTTAAAATTC
TTCCGGAATTTAATAGGATCATCTTAGACGAGGCGCATAACTTTCCGGATATTATTGGTTCTTCTTTCCGGAGAGAAATC
CGTTCTCAGGAAATTCAAAAACTTCTACAACAAATCTGGCTTCCAAATAAAAATTCGGGTGTTGCCGTTTCCATCGGATC
CAGCCCTCTTAAAGATTTAGCCACACAAGCAGGGGAAGCCCTGACCATATTTTTCAACGCTCTTTCCGGAGAAGTTCCTC
TTAATTTTTACAGTCCTCAAAGAATCAAAAGACCTCTGAAATTGGACAGAGGAAAGTTCGCCGAAATTCTTTTTGAAATC
GTAGAAATTCTACAGAAACATCTTTCTAAGTTGTCCAAGGATAACGAGGATATCACGGAAAAAGAATCCGCACTCGTCTT
AGAAATGTTAGCCGGAAGATTAAACGAAATAGCTTCTAGTTTAGAAACTTTTAGACAAGTAGACGATACAAATCTTGTCT
ATTGGATCGAACCTCCCGACCAAAATTCAAAAGAAATCTATTATAAAATTTGTATGGAACCGTTAAGTCCGGATGAAATC
ATCCGAGACCAATTCGCTTCCAGAATGCAATCGATCGTTTTTACTTCTGCTACTCTTTCTACTTCCGGAAACGATTTTAA
GTATTTTCAGAAAAAAATTGGCAATCTTAATACTTCTAATCTTTCTGTCCCTTCCCCATTTCCGTATCAAAAAAACGCTC
TTTTATATGTTCCGAAAGAAATCAGAGATCCGGTTGCAGATCCGGACGGTTATCACGCTGATTTGGCAAAACAAATTCTT
TGGCTCGTTGAATTGACTCAAGGAAACACATTCGTACTTTTTACTTCTTTTAAGTCCTTAAAACTAGTTTATGATGCCAT
TCGCCCTCATACGGATTTGCCTTTATTTTCTCAATCCGATCTAGGGCCGGATGGTGCAAAACAAATGTATCTACAAACTC
CAAATAGTGTTTTGTTTGGAGTTTCTACCTTTTGGCAAGGGATTGATATTCGAGGTGATAAACTCAAATCAGTCATTATT
GCAAAACTTCCATTTCAAGTTCCAAACGATCCTGTTTTAGAAACCAAAAGTGAAAAATTAAAAGAATCCGGTGGAAATCC
GTTCGCAGAACTACAACTCCCCTATGCCTGCACAGTTCTCAAACAAGGTTTTGGCCGTTTGATTCGTTCCGGAACTGATA
CTGGCATTGTTTCCATTTTAGATCCTAGAATGTTCACTAAAACATATGGAAGAGATCTTTTGAAATCTCTTCCTCCCGCT
AAACTGATCCAGAATCGAGAAGATTTGAGAAGAGAATTTAGTAATCTGCCGAAATAA

Upstream 100 bases:

>100_bases
GTTTAAACTGGCAAGGTATTTCTATCATGACTCTTTCTTTATTTTTAGTAACTGGTCTTTCCACGTTCTGCATTTTCAAA
CTCTTTAAAACTAGAAACCA

Downstream 100 bases:

>100_bases
ATAGAAGACTCATTTCTATTTTTAGAGTAATCAGATGAATTTCATAATTCGATTTTTTTTGATCCTTCTTTTTTGGATTC
CAATTCATAACTCATTCTCT

Product: ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 658; Mature: 658

Protein sequence:

>658_residues
MNRSLEYFDKLSSLWDDFEPRKVQIQLSQKIEDSLYNGTHLIAEAGTGVGKSLAYLIPAALISIETEEPVVISTETKSLQ
QQLLSKDIPMVSKILGIDLKAEVAMGASNYVCKRKMNHVFRDGTFGPEMIPHLDSFNQWIQNTESGRKQEFNGTASYDFW
NRITREADNCLGRNCPNFSHSFYFLEREKWKRSNILIINHHLLAAHIASDFKILPEFNRIILDEAHNFPDIIGSSFRREI
RSQEIQKLLQQIWLPNKNSGVAVSIGSSPLKDLATQAGEALTIFFNALSGEVPLNFYSPQRIKRPLKLDRGKFAEILFEI
VEILQKHLSKLSKDNEDITEKESALVLEMLAGRLNEIASSLETFRQVDDTNLVYWIEPPDQNSKEIYYKICMEPLSPDEI
IRDQFASRMQSIVFTSATLSTSGNDFKYFQKKIGNLNTSNLSVPSPFPYQKNALLYVPKEIRDPVADPDGYHADLAKQIL
WLVELTQGNTFVLFTSFKSLKLVYDAIRPHTDLPLFSQSDLGPDGAKQMYLQTPNSVLFGVSTFWQGIDIRGDKLKSVII
AKLPFQVPNDPVLETKSEKLKESGGNPFAELQLPYACTVLKQGFGRLIRSGTDTGIVSILDPRMFTKTYGRDLLKSLPPA
KLIQNREDLRREFSNLPK

Sequences:

>Translated_658_residues
MNRSLEYFDKLSSLWDDFEPRKVQIQLSQKIEDSLYNGTHLIAEAGTGVGKSLAYLIPAALISIETEEPVVISTETKSLQ
QQLLSKDIPMVSKILGIDLKAEVAMGASNYVCKRKMNHVFRDGTFGPEMIPHLDSFNQWIQNTESGRKQEFNGTASYDFW
NRITREADNCLGRNCPNFSHSFYFLEREKWKRSNILIINHHLLAAHIASDFKILPEFNRIILDEAHNFPDIIGSSFRREI
RSQEIQKLLQQIWLPNKNSGVAVSIGSSPLKDLATQAGEALTIFFNALSGEVPLNFYSPQRIKRPLKLDRGKFAEILFEI
VEILQKHLSKLSKDNEDITEKESALVLEMLAGRLNEIASSLETFRQVDDTNLVYWIEPPDQNSKEIYYKICMEPLSPDEI
IRDQFASRMQSIVFTSATLSTSGNDFKYFQKKIGNLNTSNLSVPSPFPYQKNALLYVPKEIRDPVADPDGYHADLAKQIL
WLVELTQGNTFVLFTSFKSLKLVYDAIRPHTDLPLFSQSDLGPDGAKQMYLQTPNSVLFGVSTFWQGIDIRGDKLKSVII
AKLPFQVPNDPVLETKSEKLKESGGNPFAELQLPYACTVLKQGFGRLIRSGTDTGIVSILDPRMFTKTYGRDLLKSLPPA
KLIQNREDLRREFSNLPK
>Mature_658_residues
MNRSLEYFDKLSSLWDDFEPRKVQIQLSQKIEDSLYNGTHLIAEAGTGVGKSLAYLIPAALISIETEEPVVISTETKSLQ
QQLLSKDIPMVSKILGIDLKAEVAMGASNYVCKRKMNHVFRDGTFGPEMIPHLDSFNQWIQNTESGRKQEFNGTASYDFW
NRITREADNCLGRNCPNFSHSFYFLEREKWKRSNILIINHHLLAAHIASDFKILPEFNRIILDEAHNFPDIIGSSFRREI
RSQEIQKLLQQIWLPNKNSGVAVSIGSSPLKDLATQAGEALTIFFNALSGEVPLNFYSPQRIKRPLKLDRGKFAEILFEI
VEILQKHLSKLSKDNEDITEKESALVLEMLAGRLNEIASSLETFRQVDDTNLVYWIEPPDQNSKEIYYKICMEPLSPDEI
IRDQFASRMQSIVFTSATLSTSGNDFKYFQKKIGNLNTSNLSVPSPFPYQKNALLYVPKEIRDPVADPDGYHADLAKQIL
WLVELTQGNTFVLFTSFKSLKLVYDAIRPHTDLPLFSQSDLGPDGAKQMYLQTPNSVLFGVSTFWQGIDIRGDKLKSVII
AKLPFQVPNDPVLETKSEKLKESGGNPFAELQLPYACTVLKQGFGRLIRSGTDTGIVSILDPRMFTKTYGRDLLKSLPPA
KLIQNREDLRREFSNLPK

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=633, Percent_Identity=30.9636650868878, Blast_Score=300, Evalue=2e-82,
Organism=Escherichia coli, GI1787018, Length=687, Percent_Identity=27.802037845706, Blast_Score=189, Evalue=7e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 74657; Mature: 74657

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSLEYFDKLSSLWDDFEPRKVQIQLSQKIEDSLYNGTHLIAEAGTGVGKSLAYLIPAA
CCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
LISIETEEPVVISTETKSLQQQLLSKDIPMVSKILGIDLKAEVAMGASNYVCKRKMNHVF
HHEECCCCCEEEECCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHH
RDGTFGPEMIPHLDSFNQWIQNTESGRKQEFNGTASYDFWNRITREADNCLGRNCPNFSH
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
SFYFLEREKWKRSNILIINHHLLAAHIASDFKILPEFNRIILDEAHNFPDIIGSSFRREI
CEEEEEHHHCCCCCEEEEECHHHHHHHHHCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHH
RSQEIQKLLQQIWLPNKNSGVAVSIGSSPLKDLATQAGEALTIFFNALSGEVPLNFYSPQ
HHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCHH
RIKRPLKLDRGKFAEILFEIVEILQKHLSKLSKDNEDITEKESALVLEMLAGRLNEIASS
HHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LETFRQVDDTNLVYWIEPPDQNSKEIYYKICMEPLSPDEIIRDQFASRMQSIVFTSATLS
HHHHHHCCCCCEEEEECCCCCCCHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEC
TSGNDFKYFQKKIGNLNTSNLSVPSPFPYQKNALLYVPKEIRDPVADPDGYHADLAKQIL
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHH
WLVELTQGNTFVLFTSFKSLKLVYDAIRPHTDLPLFSQSDLGPDGAKQMYLQTPNSVLFG
HHHEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHEEEEECCCHHEEE
VSTFWQGIDIRGDKLKSVIIAKLPFQVPNDPVLETKSEKLKESGGNPFAELQLPYACTVL
HHHHHCCCCCCCHHHHHHHHEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHH
KQGFGRLIRSGTDTGIVSILDPRMFTKTYGRDLLKSLPPAKLIQNREDLRREFSNLPK
HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNRSLEYFDKLSSLWDDFEPRKVQIQLSQKIEDSLYNGTHLIAEAGTGVGKSLAYLIPAA
CCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
LISIETEEPVVISTETKSLQQQLLSKDIPMVSKILGIDLKAEVAMGASNYVCKRKMNHVF
HHEECCCCCEEEECCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHH
RDGTFGPEMIPHLDSFNQWIQNTESGRKQEFNGTASYDFWNRITREADNCLGRNCPNFSH
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
SFYFLEREKWKRSNILIINHHLLAAHIASDFKILPEFNRIILDEAHNFPDIIGSSFRREI
CEEEEEHHHCCCCCEEEEECHHHHHHHHHCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHH
RSQEIQKLLQQIWLPNKNSGVAVSIGSSPLKDLATQAGEALTIFFNALSGEVPLNFYSPQ
HHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCHH
RIKRPLKLDRGKFAEILFEIVEILQKHLSKLSKDNEDITEKESALVLEMLAGRLNEIASS
HHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LETFRQVDDTNLVYWIEPPDQNSKEIYYKICMEPLSPDEIIRDQFASRMQSIVFTSATLS
HHHHHHCCCCCEEEEECCCCCCCHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEC
TSGNDFKYFQKKIGNLNTSNLSVPSPFPYQKNALLYVPKEIRDPVADPDGYHADLAKQIL
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHH
WLVELTQGNTFVLFTSFKSLKLVYDAIRPHTDLPLFSQSDLGPDGAKQMYLQTPNSVLFG
HHHEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHEEEEECCCHHEEE
VSTFWQGIDIRGDKLKSVIIAKLPFQVPNDPVLETKSEKLKESGGNPFAELQLPYACTVL
HHHHHCCCCCCCHHHHHHHHEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHH
KQGFGRLIRSGTDTGIVSILDPRMFTKTYGRDLLKSLPPAKLIQNREDLRREFSNLPK
HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]