| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is rbn [C]
Identifier: 45657209
GI number: 45657209
Start: 1640135
End: 1642384
Strand: Reverse
Name: rbn [C]
Synonym: LIC11329
Alternate gene names: 45657209
Gene position: 1642384-1640135 (Counterclockwise)
Preceding gene: 45657210
Following gene: 45657202
Centisome position: 38.4
GC content: 34.67
Gene sequence:
>2250_bases ATGTTATATTTTTTTAAACCAGGTTGGTTAACCGATTCAGATAAAATTCCCGAAAAAGTTTTTTTAAGAACCTTTGTAAT ATTCATCCGGATTATTTTGGGTTCCGCATATCGTTTTATCAAAGATGACTGTCTAATGCAAGCTTCCGGAATTTCCTATA CCACAATCGTATCTTTAATTCCTATGCTTACGGTTGCGTTATCTTTGATTACGATCACTTCTGGTTTAGAAAATAGAAAA GAGGAAATTTTTGATACTATAAATACATTCATTTTACAAAGTAACATCAGCATAGATATCAATCCATATCTGGAAACGAT TGGGGATCTAATCGACACAGCGTCCCAAATCGGAGCGATCGGATTTATAACCTTAGTATTTTCGGCAACCGCGGTTTTAC GTTCTCTTGAAAACGCATTTAACGGAATTTGGAAAATCCACTCTAATAGATCCCTATTTCAAAAATTAATATTTTACTTT TTTGTATTAGCCATCGGCCCACTTCTTTTTGTAATCGTAGAAGGAATCGCAAAAAGAACCATCGATTTCTTTAGACCTTC TCATTATTTTTCCATGGAAAAAGATCCATCCGGAAAGATTTGGGTAAGTGGAGAAAACGGAACTTTATTTCGAATGGATT CAAATCTTAAAAAGGAATATTCGATCCGGGAAGAAGAAATCGATTTTGAAAACATGAAATGTTTGGATGCGTTAGGCGGA AGGCTTGACTTCTGTAAAAAACCGGACATAGAAGCTTCCAATTTCGTTCGAATTAAAATCCGAGAAGGAGTTATCTATGC CCTTTCCGCAAAAGGATTACTTTTAATTAAACCTTTGGAATCCCCCATCTGGAGATTAGCTTCATTCGAAGGTGTCGAGC TAAAAGATATAGAGGTAATTAATTCAAATAATATTTTTATTATATTCAAAAATGGAGAAGTTCTTCATTATATTCCCGAA GGAATTTCCTTTAAACCAATCTTTAAAGATAGGCTAAAAATGAATGCTTCCAAAATTTATTTTCCGGACGAATTAAACGG TTATATAGTCGACGAATCCGGAACTGTTTGGACGAGCAACGATGGGGGTTTTAATTTTTATCCGAATCGACTGACTCATT TAGCGTTTCATGATATACATAAGACTATAAACGGGGAAATCTTTTTAGCTGGAGAAAGAGGAGCGTTGTATCGTTCTACT GACGAAGGAAATACCTGGATACAACTGAGTCATAAACGATACAACTTTATACGAATCTGGTCTTTTACTGGAACTGATAT TACAGAATTATTTCTAATGGATAGTTTAGGAAATATACTGATTTCAACGGATCTAGGGGAACATTGGAATCCGTTTTATA CTCCTATGAACGGTAAATTATGGGCCAATCTTCTTTTAGAAAGAAAAGAAAACGGACAAATTAAAATACTCAACATAGGC GAATATCGCACTATTAGCGTTACTGAATCCAAAGACCAGAAATTTGCAACGACACTAATCACAGGAGGAGACAGCGTATT TACAATTTATTCCTTTTTAAGAATTTTGTTTCCTCTTTCTGGAATTTGGCTTTTCTTTCTAAGTCTTTATTCTTTGATTC CGAACACGAAAGTTCCTTTAAAAGCGTCTTCCGTGGGAGCTGCAGTTACAGGAGTCATCTTTTTAGTTTTTCTCTGGGGA TTTCAAGTCTATATTTTATCTTTTACTGAAACTACGATGATCATTTATAAGGCGTTAGCCGCTATTCCAATTTTTCTTTT AGGAGTATATTCACTTTCTTTAATTGTTTTGTTCGGAGCAGAAATCACCGCTTGTCTTCAATTTAGAGAAAGATACATCG CTCCTTTACACTCTTTGGAGGAAATGAATACTTCGCCTAGTAACGAGTTTAGAAAATTGATTTTGACTTTAAAATCAGCT TATAAAATCCAAAAAGAAAAAAAAGTCCCCTCTTCTCATGTTGAACTTTCTTCCGTCTCTGGTTTAAAGGAAGAGGAAAT TCCGGGACTTACCAAAAAACTCTGTGAGTTAGAATTATTATCTGAAACTAAAAAAAATGAATTTGTTCCGATCGCTTCTC CTGTTGATTTAAGTATCGCAGACGTCTATCGGAAAGTTCCAGAACCTCTTTTGACAGGAGATCAAAATTTGAAACTATTT CCGACAAACATCATTTCTAAAATCGAAAAAACGGAGGAAAAACTACAAAACGATCTGGACGCAATTAAATTTAGCGATCT AATCAGCTAA
Upstream 100 bases:
>100_bases GATTCGAATTAGCGTTTATCACTGGAAAAGCAAACTCAAAAAACAAAACAGGCCCTTGACTTCGTCTATGGTTCTGTACG GATTCAAGGCGGATTAAACA
Downstream 100 bases:
>100_bases CAAGGATAAGCTGTTTTTTAAGGCTCAAAAATTTTCAGACATAAGAAAATGTTAAAAACTTTGTTTTACCGATTTTTATT TAAAGTTTTTTCATTCTTGA
Product: ribonuclease BN transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 749; Mature: 749
Protein sequence:
>749_residues MLYFFKPGWLTDSDKIPEKVFLRTFVIFIRIILGSAYRFIKDDCLMQASGISYTTIVSLIPMLTVALSLITITSGLENRK EEIFDTINTFILQSNISIDINPYLETIGDLIDTASQIGAIGFITLVFSATAVLRSLENAFNGIWKIHSNRSLFQKLIFYF FVLAIGPLLFVIVEGIAKRTIDFFRPSHYFSMEKDPSGKIWVSGENGTLFRMDSNLKKEYSIREEEIDFENMKCLDALGG RLDFCKKPDIEASNFVRIKIREGVIYALSAKGLLLIKPLESPIWRLASFEGVELKDIEVINSNNIFIIFKNGEVLHYIPE GISFKPIFKDRLKMNASKIYFPDELNGYIVDESGTVWTSNDGGFNFYPNRLTHLAFHDIHKTINGEIFLAGERGALYRST DEGNTWIQLSHKRYNFIRIWSFTGTDITELFLMDSLGNILISTDLGEHWNPFYTPMNGKLWANLLLERKENGQIKILNIG EYRTISVTESKDQKFATTLITGGDSVFTIYSFLRILFPLSGIWLFFLSLYSLIPNTKVPLKASSVGAAVTGVIFLVFLWG FQVYILSFTETTMIIYKALAAIPIFLLGVYSLSLIVLFGAEITACLQFRERYIAPLHSLEEMNTSPSNEFRKLILTLKSA YKIQKEKKVPSSHVELSSVSGLKEEEIPGLTKKLCELELLSETKKNEFVPIASPVDLSIADVYRKVPEPLLTGDQNLKLF PTNIISKIEKTEEKLQNDLDAIKFSDLIS
Sequences:
>Translated_749_residues MLYFFKPGWLTDSDKIPEKVFLRTFVIFIRIILGSAYRFIKDDCLMQASGISYTTIVSLIPMLTVALSLITITSGLENRK EEIFDTINTFILQSNISIDINPYLETIGDLIDTASQIGAIGFITLVFSATAVLRSLENAFNGIWKIHSNRSLFQKLIFYF FVLAIGPLLFVIVEGIAKRTIDFFRPSHYFSMEKDPSGKIWVSGENGTLFRMDSNLKKEYSIREEEIDFENMKCLDALGG RLDFCKKPDIEASNFVRIKIREGVIYALSAKGLLLIKPLESPIWRLASFEGVELKDIEVINSNNIFIIFKNGEVLHYIPE GISFKPIFKDRLKMNASKIYFPDELNGYIVDESGTVWTSNDGGFNFYPNRLTHLAFHDIHKTINGEIFLAGERGALYRST DEGNTWIQLSHKRYNFIRIWSFTGTDITELFLMDSLGNILISTDLGEHWNPFYTPMNGKLWANLLLERKENGQIKILNIG EYRTISVTESKDQKFATTLITGGDSVFTIYSFLRILFPLSGIWLFFLSLYSLIPNTKVPLKASSVGAAVTGVIFLVFLWG FQVYILSFTETTMIIYKALAAIPIFLLGVYSLSLIVLFGAEITACLQFRERYIAPLHSLEEMNTSPSNEFRKLILTLKSA YKIQKEKKVPSSHVELSSVSGLKEEEIPGLTKKLCELELLSETKKNEFVPIASPVDLSIADVYRKVPEPLLTGDQNLKLF PTNIISKIEKTEEKLQNDLDAIKFSDLIS >Mature_749_residues MLYFFKPGWLTDSDKIPEKVFLRTFVIFIRIILGSAYRFIKDDCLMQASGISYTTIVSLIPMLTVALSLITITSGLENRK EEIFDTINTFILQSNISIDINPYLETIGDLIDTASQIGAIGFITLVFSATAVLRSLENAFNGIWKIHSNRSLFQKLIFYF FVLAIGPLLFVIVEGIAKRTIDFFRPSHYFSMEKDPSGKIWVSGENGTLFRMDSNLKKEYSIREEEIDFENMKCLDALGG RLDFCKKPDIEASNFVRIKIREGVIYALSAKGLLLIKPLESPIWRLASFEGVELKDIEVINSNNIFIIFKNGEVLHYIPE GISFKPIFKDRLKMNASKIYFPDELNGYIVDESGTVWTSNDGGFNFYPNRLTHLAFHDIHKTINGEIFLAGERGALYRST DEGNTWIQLSHKRYNFIRIWSFTGTDITELFLMDSLGNILISTDLGEHWNPFYTPMNGKLWANLLLERKENGQIKILNIG EYRTISVTESKDQKFATTLITGGDSVFTIYSFLRILFPLSGIWLFFLSLYSLIPNTKVPLKASSVGAAVTGVIFLVFLWG FQVYILSFTETTMIIYKALAAIPIFLLGVYSLSLIVLFGAEITACLQFRERYIAPLHSLEEMNTSPSNEFRKLILTLKSA YKIQKEKKVPSSHVELSSVSGLKEEEIPGLTKKLCELELLSETKKNEFVPIASPVDLSIADVYRKVPEPLLTGDQNLKLF PTNIISKIEKTEEKLQNDLDAIKFSDLIS
Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]
COG id: COG1295
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0761 family [H]
Homologues:
Organism=Escherichia coli, GI1790319, Length=118, Percent_Identity=38.9830508474576, Blast_Score=62, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017039 - InterPro: IPR004664 [H]
Pfam domain/function: PF03631 Ribonuclease_BN [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 85008; Mature: 85008
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYFFKPGWLTDSDKIPEKVFLRTFVIFIRIILGSAYRFIKDDCLMQASGISYTTIVSLI CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHH PMLTVALSLITITSGLENRKEEIFDTINTFILQSNISIDINPYLETIGDLIDTASQIGAI HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCEEEECHHHHHHHHHHHHHHHHHHH GFITLVFSATAVLRSLENAFNGIWKIHSNRSLFQKLIFYFFVLAIGPLLFVIVEGIAKRT HHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDFFRPSHYFSMEKDPSGKIWVSGENGTLFRMDSNLKKEYSIREEEIDFENMKCLDALGG HHHHCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHCCCHHCCCHHHHHHHHHCCC RLDFCKKPDIEASNFVRIKIREGVIYALSAKGLLLIKPLESPIWRLASFEGVELKDIEVI CCCCCCCCCCCCCCEEEEEEECCEEEEEECCCEEEEECCCCHHHHHHCCCCCEEEEEEEE NSNNIFIIFKNGEVLHYIPEGISFKPIFKDRLKMNASKIYFPDELNGYIVDESGTVWTSN ECCCEEEEEECCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEECCCCEEEECC DGGFNFYPNRLTHLAFHDIHKTINGEIFLAGERGALYRSTDEGNTWIQLSHKRYNFIRIW CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCEEEEEECCCCCEEEEE SFTGTDITELFLMDSLGNILISTDLGEHWNPFYTPMNGKLWANLLLERKENGQIKILNIG EECCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEC EYRTISVTESKDQKFATTLITGGDSVFTIYSFLRILFPLSGIWLFFLSLYSLIPNTKVPL CEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC KASSVGAAVTGVIFLVFLWGFQVYILSFTETTMIIYKALAAIPIFLLGVYSLSLIVLFGA CCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EITACLQFRERYIAPLHSLEEMNTSPSNEFRKLILTLKSAYKIQKEKKVPSSHVELSSVS HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHC GLKEEEIPGLTKKLCELELLSETKKNEFVPIASPVDLSIADVYRKVPEPLLTGDQNLKLF CCCHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCHHHCCCCCCEEE PTNIISKIEKTEEKLQNDLDAIKFSDLIS CHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLYFFKPGWLTDSDKIPEKVFLRTFVIFIRIILGSAYRFIKDDCLMQASGISYTTIVSLI CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHH PMLTVALSLITITSGLENRKEEIFDTINTFILQSNISIDINPYLETIGDLIDTASQIGAI HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCEEEECHHHHHHHHHHHHHHHHHHH GFITLVFSATAVLRSLENAFNGIWKIHSNRSLFQKLIFYFFVLAIGPLLFVIVEGIAKRT HHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDFFRPSHYFSMEKDPSGKIWVSGENGTLFRMDSNLKKEYSIREEEIDFENMKCLDALGG HHHHCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHCCCHHCCCHHHHHHHHHCCC RLDFCKKPDIEASNFVRIKIREGVIYALSAKGLLLIKPLESPIWRLASFEGVELKDIEVI CCCCCCCCCCCCCCEEEEEEECCEEEEEECCCEEEEECCCCHHHHHHCCCCCEEEEEEEE NSNNIFIIFKNGEVLHYIPEGISFKPIFKDRLKMNASKIYFPDELNGYIVDESGTVWTSN ECCCEEEEEECCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEECCCCEEEECC DGGFNFYPNRLTHLAFHDIHKTINGEIFLAGERGALYRSTDEGNTWIQLSHKRYNFIRIW CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCEEEEEECCCCCEEEEE SFTGTDITELFLMDSLGNILISTDLGEHWNPFYTPMNGKLWANLLLERKENGQIKILNIG EECCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEC EYRTISVTESKDQKFATTLITGGDSVFTIYSFLRILFPLSGIWLFFLSLYSLIPNTKVPL CEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC KASSVGAAVTGVIFLVFLWGFQVYILSFTETTMIIYKALAAIPIFLLGVYSLSLIVLFGA CCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EITACLQFRERYIAPLHSLEEMNTSPSNEFRKLILTLKSAYKIQKEKKVPSSHVELSSVS HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHC GLKEEEIPGLTKKLCELELLSETKKNEFVPIASPVDLSIADVYRKVPEPLLTGDQNLKLF CCCHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCHHHCCCCCCEEE PTNIISKIEKTEEKLQNDLDAIKFSDLIS CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA