| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is ccmF
Identifier: 45656704
GI number: 45656704
Start: 983052
End: 985241
Strand: Reverse
Name: ccmF
Synonym: LIC10813
Alternate gene names: 45656704
Gene position: 985241-983052 (Counterclockwise)
Preceding gene: 45656705
Following gene: 45656703
Centisome position: 23.03
GC content: 39.41
Gene sequence:
>2190_bases ATGAATGATTTCGGCGCTCTTTGCATCATAACGTCTTTTGCGATCCTTATATTTTCGATCGTACAAACTTCTTACGGAAT TTGGAAACAAGACAAACAGGTAATCGAACTCGGTAGATATACTTTGATGGCAAATTCCGCCATCATCCTTTTAGCTTTTA TCGTCTTACTCGTTCAACTTTTCAGAACCGATCTTTCTAATTACTATGTGGTAATGCATTCCAACGAACACTTACCTTTA TTTTATAGACTTACCGGAATTTGGTCCGGTTCCTCCGGTTCCTTACTTTTTTGGAATCTTTTACTTTCACTTTTTACATT CATCGTTCTTTGGCAAACAAAGGATCTAACCCAAGATAGAATTCCTGTCTTAAATTTAACGTTAGCCGTCATATCTGCTT TTTTTTCTTATCTTGCTGTATTTTATCCGGATGCCCAACCATTTCGAGAATTTCAACCGGCGGCAGTTGCCGGCAGAGGA TTAAATCCTCTTTTACAACACTGGGCCATGGTCATCCATCCTCCGATTCTTTATGTGGGTTACGTAAGTTTTGCGATTCC TTTTGCAATTGCAGCCTCGGCTTTAATCACAGGACATCTTTCCGAAAATTGGTTTCGTTTTGTTAGAAGGTGGACTATCT TTTCTTGGTTTTTTTTAGGAACCGGAATTCTACTCGGTTCCAAATGGGCTTACGAAGAATTAGGTTGGGGAGGTTACTGG GCCTGGGATCCCGTAGAAAACGCTTCTCTTATGCCCTGGCTTTTATCCACTGCATTTCTTCATTCTATGATCATCCAAGA AAGAAGAGGTATGTTAAAGTTTTGGAATATGCTTTTGATCATACTCGCTTTTCATTTTTGTTTATTAGGAACTTGGATCA CCCGAAGTGGAGTACTCGAAGGTCCTCATAGTTTTTCCAAGTCCACAATCGGCACCCCGTTCATCATCTACATCGGAATT AGTTTTTTCTTCTTTTTAGGATTTTTAATCTACCGCAGAAATTCTCTAAAACCCGAGCGCAATCTGGAGGCAATGACCTC TAAAGAAGGCAGTTTTCTTTTTAATAACTTCCTACTTGTAATCGCTACTCTTGCGATTCTTTTAGGAGTTTTTTCTCCTC TTCTTTATGGAAGAGAATTTAAAGCTCCTTGGTTCAACTCTTGGGGAGTTCCAGTGGGAATCCTTTTGATCCTTTTGATG GGTTCGGCACCACTTCTCGCTTGGAGAAAAAGCGCGGACAAAATTTTTTTCTCGACCCTCCTCAAACCGTTGTTAGTCGG AATTGCAGGAGCTGGAATGTACATTTTATTTTATACTAAAAACTTTACGATTAGCGAATACAGTTTAGGCGACGTATTAG GGGAAATTTATTCAGTGATCGCGGTTGGTCTCGGAATTTTTACGACTGCCGGAATTGTACAGGAATATCATAGAGGGATC ATCGCCAGAAAAACTGCGTATCCAAACGAGAATTATTTTTTTTCCGGATTTAGGATGCTTTTAAAAAATAAAAGAAGATA CGGAGGTTACCTAGTTCACTTGGCGATGGTGATACTTTTTATAGGTTATGCAGGGAACGCGTTTAAACAAAACACATCCA TTAAGTTTTTCTACTTCTTGAACGCACCCGAAAAAAACGAAATCGTCTATTCGAGTCAGGATACGGGAGTTCTCGGAAAC TATCAGATCTCGGCAAACACTCTGAAGATCAAACCTCTCGTCAACGGAGACGCAAAGAACGGACTCAACATTCAAAACGT GATCGTTTCTCACGAAGCAACCTTTCAAGTAAAACGGAATCTAAAAGAATTTTCTACAATGGTTACAGAAAGAAGATTTT ATCCACAAATCTCTCACTTAAGCGGAGACTTTGAAACTCATATCCCTACAAGCGAACCCGCAATTTCTTCCACTCCTAAA GAAGACTTATACATTCAACTCGGGGCTATCGAACATTCCGATCTTTCCGATGAAAATCCAGACCTTCCTATACTTTTTAT GAATTATCTTTTTACAAATGAGAATCAGCCAGTTCGTAAATTGGAAAACTTCAATCGATTTCCAAGACAACTCGTAGCCA ACTTAGAAGTCTGGGTAAACCCTCTGGTAAAATTTATTTGGGTGGGTTCATTGTTATTTTTCTTTTCGGGGCTATTAATT CTTCTCCCGATCGGAGAATCCAGATCATGA
Upstream 100 bases:
>100_bases GGAGTGCTCGTTTCCGACCACGTGGAAGCAAAATGTGCTTCCAAATACGAAGCCGATTATTCAGAAGAAAATAAGTAAAA AAGGATTATAACTTTTTAAT
Downstream 100 bases:
>100_bases AAATAGTATTTCATAATATTCTAATTTTATTTACCTTCTGGAGCGTATTCATTTTGAACGGCTCATTTATGTCTTTGTCT GCGGATTCCACGTTCACCAA
Product: cytochrome C biogenesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MNDFGALCIITSFAILIFSIVQTSYGIWKQDKQVIELGRYTLMANSAIILLAFIVLLVQLFRTDLSNYYVVMHSNEHLPL FYRLTGIWSGSSGSLLFWNLLLSLFTFIVLWQTKDLTQDRIPVLNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRG LNPLLQHWAMVIHPPILYVGYVSFAIPFAIAASALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIILAFHFCLLGTWITRSGVLEGPHSFSKSTIGTPFIIYIGI SFFFFLGFLIYRRNSLKPERNLEAMTSKEGSFLFNNFLLVIATLAILLGVFSPLLYGREFKAPWFNSWGVPVGILLILLM GSAPLLAWRKSADKIFFSTLLKPLLVGIAGAGMYILFYTKNFTISEYSLGDVLGEIYSVIAVGLGIFTTAGIVQEYHRGI IARKTAYPNENYFFSGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFLNAPEKNEIVYSSQDTGVLGN YQISANTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRNLKEFSTMVTERRFYPQISHLSGDFETHIPTSEPAISSTPK EDLYIQLGAIEHSDLSDENPDLPILFMNYLFTNENQPVRKLENFNRFPRQLVANLEVWVNPLVKFIWVGSLLFFFSGLLI LLPIGESRS
Sequences:
>Translated_729_residues MNDFGALCIITSFAILIFSIVQTSYGIWKQDKQVIELGRYTLMANSAIILLAFIVLLVQLFRTDLSNYYVVMHSNEHLPL FYRLTGIWSGSSGSLLFWNLLLSLFTFIVLWQTKDLTQDRIPVLNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRG LNPLLQHWAMVIHPPILYVGYVSFAIPFAIAASALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIILAFHFCLLGTWITRSGVLEGPHSFSKSTIGTPFIIYIGI SFFFFLGFLIYRRNSLKPERNLEAMTSKEGSFLFNNFLLVIATLAILLGVFSPLLYGREFKAPWFNSWGVPVGILLILLM GSAPLLAWRKSADKIFFSTLLKPLLVGIAGAGMYILFYTKNFTISEYSLGDVLGEIYSVIAVGLGIFTTAGIVQEYHRGI IARKTAYPNENYFFSGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFLNAPEKNEIVYSSQDTGVLGN YQISANTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRNLKEFSTMVTERRFYPQISHLSGDFETHIPTSEPAISSTPK EDLYIQLGAIEHSDLSDENPDLPILFMNYLFTNENQPVRKLENFNRFPRQLVANLEVWVNPLVKFIWVGSLLFFFSGLLI LLPIGESRS >Mature_729_residues MNDFGALCIITSFAILIFSIVQTSYGIWKQDKQVIELGRYTLMANSAIILLAFIVLLVQLFRTDLSNYYVVMHSNEHLPL FYRLTGIWSGSSGSLLFWNLLLSLFTFIVLWQTKDLTQDRIPVLNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRG LNPLLQHWAMVIHPPILYVGYVSFAIPFAIAASALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIILAFHFCLLGTWITRSGVLEGPHSFSKSTIGTPFIIYIGI SFFFFLGFLIYRRNSLKPERNLEAMTSKEGSFLFNNFLLVIATLAILLGVFSPLLYGREFKAPWFNSWGVPVGILLILLM GSAPLLAWRKSADKIFFSTLLKPLLVGIAGAGMYILFYTKNFTISEYSLGDVLGEIYSVIAVGLGIFTTAGIVQEYHRGI IARKTAYPNENYFFSGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFLNAPEKNEIVYSSQDTGVLGN YQISANTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRNLKEFSTMVTERRFYPQISHLSGDFETHIPTSEPAISSTPK EDLYIQLGAIEHSDLSDENPDLPILFMNYLFTNENQPVRKLENFNRFPRQLVANLEVWVNPLVKFIWVGSLLFFFSGLLI LLPIGESRS
Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]
COG id: COG1138
COG function: function code O; Cytochrome c biogenesis factor
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]
Homologues:
Organism=Escherichia coli, GI1788524, Length=730, Percent_Identity=29.5890410958904, Blast_Score=250, Evalue=2e-67, Organism=Escherichia coli, GI1790511, Length=345, Percent_Identity=35.6521739130435, Blast_Score=192, Evalue=9e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002541 - InterPro: IPR003567 - InterPro: IPR003568 [H]
Pfam domain/function: PF01578 Cytochrom_C_asm [H]
EC number: NA
Molecular weight: Translated: 82919; Mature: 82919
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDFGALCIITSFAILIFSIVQTSYGIWKQDKQVIELGRYTLMANSAIILLAFIVLLVQL CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH FRTDLSNYYVVMHSNEHLPLFYRLTGIWSGSSGSLLFWNLLLSLFTFIVLWQTKDLTQDR HHHCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC IPVLNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRGLNPLLQHWAMVIHPPILYVG CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCCHHHHHHHHHHCCHHHHHH YVSFAIPFAIAASALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEE AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIILAFHFCLLGTWITRSGVLE CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GPHSFSKSTIGTPFIIYIGISFFFFLGFLIYRRNSLKPERNLEAMTSKEGSFLFNNFLLV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHH IATLAILLGVFSPLLYGREFKAPWFNSWGVPVGILLILLMGSAPLLAWRKSADKIFFSTL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LKPLLVGIAGAGMYILFYTKNFTISEYSLGDVLGEIYSVIAVGLGIFTTAGIVQEYHRGI HHHHHHHHCCCCEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH IARKTAYPNENYFFSGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFL HEECCCCCCCCCHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE NAPEKNEIVYSSQDTGVLGNYQISANTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRN CCCCCCCEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCCCCHHHEEECCCHHHHHHHH LKEFSTMVTERRFYPQISHLSGDFETHIPTSEPAISSTPKEDLYIQLGAIEHSDLSDENP HHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEECCCCCCCCC DLPILFMNYLFTNENQPVRKLENFNRFPRQLVANLEVWVNPLVKFIWVGSLLFFFSGLLI CCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE LLPIGESRS EEECCCCCC >Mature Secondary Structure MNDFGALCIITSFAILIFSIVQTSYGIWKQDKQVIELGRYTLMANSAIILLAFIVLLVQL CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH FRTDLSNYYVVMHSNEHLPLFYRLTGIWSGSSGSLLFWNLLLSLFTFIVLWQTKDLTQDR HHHCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC IPVLNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRGLNPLLQHWAMVIHPPILYVG CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCCHHHHHHHHHHCCHHHHHH YVSFAIPFAIAASALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEE AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIILAFHFCLLGTWITRSGVLE CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GPHSFSKSTIGTPFIIYIGISFFFFLGFLIYRRNSLKPERNLEAMTSKEGSFLFNNFLLV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHH IATLAILLGVFSPLLYGREFKAPWFNSWGVPVGILLILLMGSAPLLAWRKSADKIFFSTL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LKPLLVGIAGAGMYILFYTKNFTISEYSLGDVLGEIYSVIAVGLGIFTTAGIVQEYHRGI HHHHHHHHCCCCEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH IARKTAYPNENYFFSGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFL HEECCCCCCCCCHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE NAPEKNEIVYSSQDTGVLGNYQISANTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRN CCCCCCCEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCCCCHHHEEECCCHHHHHHHH LKEFSTMVTERRFYPQISHLSGDFETHIPTSEPAISSTPKEDLYIQLGAIEHSDLSDENP HHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEECCCCCCCCC DLPILFMNYLFTNENQPVRKLENFNRFPRQLVANLEVWVNPLVKFIWVGSLLFFFSGLLI CCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE LLPIGESRS EEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]