Click here to switch to the map view.

The map label for this gene is 45656541

Identifier: 45656541

GI number: 45656541

Start: 785645

End: 786946

Strand: Reverse

Name: 45656541

Synonym: LIC10643

Alternate gene names: NA

Gene position: 786946-785645 (Counterclockwise)

Preceding gene: 45656542

Following gene: 45656540

Centisome position: 18.4

GC content: 32.57

Gene sequence:

>1302_bases
ATGGAAAAAAAAGATCTACAAGAAGAGTTTGAAGAACTAATGTCTCTGTTTCTTTTCGGCGGAACAGAATCGGAAGAAGA
AAAAAGATTAAACGAAATCATATCGATTCATCCAGAATTTAAAAAAAGATACGATAACTATGTAAAAATACAAGCTGGTC
TAAAACAACATAAGATTGGACTTGAGAAAATTCTAATTGAGTCTTCGAAATCTTCTTCTAAAATCAGTTTATTTCCCGGA
AAATTTAAAAATCAATTTCTAGCGATCGCTGCGATTATTTCTTTAATCGTTTCTTTATCCGTAGTTTTTCAATTAGGAAT
ATTCAAAAAAGATGAACAACTTCTCGTAGTAGCCAGTGGAACGTGTAATATAGAGACACTACAGAAAGATTGGATTCGAC
CGGATCAAAATTCTTTTTGCGACGTAAAGATAGAAAGCCAGATTCATTTCAGAATTTTTCCAAATTCGGAAGTTCGAATT
TTACAATTGCCTAAAACCGTTCAAGAATCAAAAATAAACGGTTTATCTATATTTGTACAAAAAGGAAATCTATTATTAAA
CGAAACTCTAACAGATAATAAAAAACAAACTAGAATTTATTTGAATGGAACCGAAATCCAACTCACTGGAACCAAGGTAT
GGATCGAAAATTCCGAAGAACGTTATAAAATCAACGTTTGGGACGGATCGGCAGAAGTCCGATCGGGTGTTCGTTATTTA
CTTCCGTTCTTATTGGACAAACAAATGGAAAAATCCGTAAAACATACGTTAGATAAATATCCAGAACAAAAAACAAAATA
TGAAAGCATCTGGAACGACATTTCTTCGGAAAAACTTTCCAATTCTTCTTTGGAAACAAAATCCTTATTCTTTCAAAAAG
ATTCCGTTCAAAACCCACTTCTTATTCTAAATGAAAAACAAACAAATCCAAATGAAATGTTCCTTCTTTTGGAAAAAATG
CAGAAAACGATCGTAGAAACGGCTTCGCACAAAAAAACAACCGTATTAGAAAAAAAAGACATCCAAGAACTGGAAACGTT
TGTTAGCCACGTTGAAAATCCTAAACCGATAGAACTTCCAAAAGAAAAAATGGAACCAATCATATCACCAATTCCTAAAG
TAGAAAAAAAGATAGAATCGAAAAAGGAAGAGCCCATTCGCTTAGGAGATAAAACGATCAAACTAAAGGACGGTTCCGAA
TTGAAGGGAAATCTGATCCAATACGAAGATAGATATATCATCGAAATCGAAGGTAAAAAAAGAGTAATTTTGTCCAAAGA
CGTTGAATCGATTTCATTTTAA

Upstream 100 bases:

>100_bases
AAGCGTTAAACATATCAACAAGAACCGTCAGCAGAAAACTATTAAAAGCGCTGGATCTACTTAGAGAAGAATTAGAAAGA
AGAAAAGTGGTTTTATAATT

Downstream 100 bases:

>100_bases
ATTGTTTTATATAAGTTATGCCTTATAGAAATATACAAAGAATTGGGGCTTTTATAATAATTCTTTGTTTTCATATTTTA
CCAAACTCGGGAACAATCTC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF 2 [H]

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MEKKDLQEEFEELMSLFLFGGTESEEEKRLNEIISIHPEFKKRYDNYVKIQAGLKQHKIGLEKILIESSKSSSKISLFPG
KFKNQFLAIAAIISLIVSLSVVFQLGIFKKDEQLLVVASGTCNIETLQKDWIRPDQNSFCDVKIESQIHFRIFPNSEVRI
LQLPKTVQESKINGLSIFVQKGNLLLNETLTDNKKQTRIYLNGTEIQLTGTKVWIENSEERYKINVWDGSAEVRSGVRYL
LPFLLDKQMEKSVKHTLDKYPEQKTKYESIWNDISSEKLSNSSLETKSLFFQKDSVQNPLLILNEKQTNPNEMFLLLEKM
QKTIVETASHKKTTVLEKKDIQELETFVSHVENPKPIELPKEKMEPIISPIPKVEKKIESKKEEPIRLGDKTIKLKDGSE
LKGNLIQYEDRYIIEIEGKKRVILSKDVESISF

Sequences:

>Translated_433_residues
MEKKDLQEEFEELMSLFLFGGTESEEEKRLNEIISIHPEFKKRYDNYVKIQAGLKQHKIGLEKILIESSKSSSKISLFPG
KFKNQFLAIAAIISLIVSLSVVFQLGIFKKDEQLLVVASGTCNIETLQKDWIRPDQNSFCDVKIESQIHFRIFPNSEVRI
LQLPKTVQESKINGLSIFVQKGNLLLNETLTDNKKQTRIYLNGTEIQLTGTKVWIENSEERYKINVWDGSAEVRSGVRYL
LPFLLDKQMEKSVKHTLDKYPEQKTKYESIWNDISSEKLSNSSLETKSLFFQKDSVQNPLLILNEKQTNPNEMFLLLEKM
QKTIVETASHKKTTVLEKKDIQELETFVSHVENPKPIELPKEKMEPIISPIPKVEKKIESKKEEPIRLGDKTIKLKDGSE
LKGNLIQYEDRYIIEIEGKKRVILSKDVESISF
>Mature_433_residues
MEKKDLQEEFEELMSLFLFGGTESEEEKRLNEIISIHPEFKKRYDNYVKIQAGLKQHKIGLEKILIESSKSSSKISLFPG
KFKNQFLAIAAIISLIVSLSVVFQLGIFKKDEQLLVVASGTCNIETLQKDWIRPDQNSFCDVKIESQIHFRIFPNSEVRI
LQLPKTVQESKINGLSIFVQKGNLLLNETLTDNKKQTRIYLNGTEIQLTGTKVWIENSEERYKINVWDGSAEVRSGVRYL
LPFLLDKQMEKSVKHTLDKYPEQKTKYESIWNDISSEKLSNSSLETKSLFFQKDSVQNPLLILNEKQTNPNEMFLLLEKM
QKTIVETASHKKTTVLEKKDIQELETFVSHVENPKPIELPKEKMEPIISPIPKVEKKIESKKEEPIRLGDKTIKLKDGSE
LKGNLIQYEDRYIIEIEGKKRVILSKDVESISF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50084; Mature: 50084

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKDLQEEFEELMSLFLFGGTESEEEKRLNEIISIHPEFKKRYDNYVKIQAGLKQHKIG
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCHHHHHCC
LEKILIESSKSSSKISLFPGKFKNQFLAIAAIISLIVSLSVVFQLGIFKKDEQLLVVASG
HHHHHEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
TCNIETLQKDWIRPDQNSFCDVKIESQIHFRIFPNSEVRILQLPKTVQESKINGLSIFVQ
CCCHHHHHHHCCCCCCCCEEEEEEECEEEEEECCCCCEEEEECCCHHHHCCCCCEEEEEE
KGNLLLNETLTDNKKQTRIYLNGTEIQLTGTKVWIENSEERYKINVWDGSAEVRSGVRYL
ECCEEEECCCCCCCCEEEEEEECCEEEEEEEEEEEECCCCEEEEEEECCCHHHHHHHHHH
LPFLLDKQMEKSVKHTLDKYPEQKTKYESIWNDISSEKLSNSSLETKSLFFQKDSVQNPL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCCCCE
LILNEKQTNPNEMFLLLEKMQKTIVETASHKKTTVLEKKDIQELETFVSHVENPKPIELP
EEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
KEKMEPIISPIPKVEKKIESKKEEPIRLGDKTIKLKDGSELKGNLIQYEDRYIIEIEGKK
HHHHHHHHCCCHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCEEEECCEEEEEECCCE
RVILSKDVESISF
EEEEECCHHHCCC
>Mature Secondary Structure
MEKKDLQEEFEELMSLFLFGGTESEEEKRLNEIISIHPEFKKRYDNYVKIQAGLKQHKIG
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCHHHHHCC
LEKILIESSKSSSKISLFPGKFKNQFLAIAAIISLIVSLSVVFQLGIFKKDEQLLVVASG
HHHHHEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
TCNIETLQKDWIRPDQNSFCDVKIESQIHFRIFPNSEVRILQLPKTVQESKINGLSIFVQ
CCCHHHHHHHCCCCCCCCEEEEEEECEEEEEECCCCCEEEEECCCHHHHCCCCCEEEEEE
KGNLLLNETLTDNKKQTRIYLNGTEIQLTGTKVWIENSEERYKINVWDGSAEVRSGVRYL
ECCEEEECCCCCCCCEEEEEEECCEEEEEEEEEEEECCCCEEEEEEECCCHHHHHHHHHH
LPFLLDKQMEKSVKHTLDKYPEQKTKYESIWNDISSEKLSNSSLETKSLFFQKDSVQNPL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCCCCE
LILNEKQTNPNEMFLLLEKMQKTIVETASHKKTTVLEKKDIQELETFVSHVENPKPIELP
EEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
KEKMEPIISPIPKVEKKIESKKEEPIRLGDKTIKLKDGSELKGNLIQYEDRYIIEIEGKK
HHHHHHHHCCCHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCEEEECCEEEEEECCCE
RVILSKDVESISF
EEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2163985 [H]