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The map label for this gene is ygiD [H]

Identifier: 45656516

GI number: 45656516

Start: 756959

End: 757732

Strand: Reverse

Name: ygiD [H]

Synonym: LIC10618

Alternate gene names: 45656516

Gene position: 757732-756959 (Counterclockwise)

Preceding gene: 45656524

Following gene: 45656510

Centisome position: 17.72

GC content: 37.34

Gene sequence:

>774_bases
ATGACAAATCCTGTTTTATTTTTAGGACACGGTTCTCCAATGAACCTCATTACTACTTCCGACTTCACTCAAAATTTAGA
AACATTCGGCTCTACACTTTCAGAAATTAAAAATATACTCGTAATTTCTGCACATTGGAAAACGAGAGGAACTTATGTAA
CGGTCGCTGATCCACCAGAACAGATCTATGATTTTTACGGATTTCCACAAGAATTATACGAAGTAAAATATAGACCATCT
GGATCTACAGAACTTGCACAACAAATTCAAAAACTAGTAAAAACCGTAGACGTTTGGGCAACAAAAGATTGGGGATTGGA
CCACGGAAGCTGGGGAGTATTGTATTTTTTATTTCGGAAAGCGAACTTTCCAGTCATCCAATTGAGTATAGACGCAAACT
GTAATCCAGAAAAACAATACGAAATCGGAAAAGAATTACGACCTCTTCGCGAAGAAGGAACTTTAATATTAGGAAGTGGT
AATATTGTACACAATCTTCATAAAGCCGACTTTTACAACCTAAACGCAACTCCCACGGATTGGGCAATCGAATTTGACGA
ATATATGAGACAAGCGTTGGAGTCCAGAAACGACAAAATAATTTTAGACTTTCAAAACAAAGGAGAAATCGCAAAACTTG
CAGCACCCAGCACGGAACATTTAGAACCTATCTTTTACGTTTTAGGAGCGATGAAACCGGAAGAAAAAGTGAAATTCATT
CATCATAGTTTTCAAAATCGGACCGTATCGATGCGATCTTTCACTTCGGTTTAA

Upstream 100 bases:

>100_bases
GATCAGTCTTACAATCATAATTCCAACTTGTAAAGATATTTTCTATAGATAAGAAAGGTCTAAAATAGAAATATGAAATA
CAACGAGGAAATTTTCCCTT

Downstream 100 bases:

>100_bases
AAAAACGCGGTTCGACGTAAGACAACCCGGCTGCCACGGACTCTAACTCAGTATTTCTCCCTGTCGAATGATCTATAGAG
AATAAGGCACGTATTTCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTNPVLFLGHGSPMNLITTSDFTQNLETFGSTLSEIKNILVISAHWKTRGTYVTVADPPEQIYDFYGFPQELYEVKYRPS
GSTELAQQIQKLVKTVDVWATKDWGLDHGSWGVLYFLFRKANFPVIQLSIDANCNPEKQYEIGKELRPLREEGTLILGSG
NIVHNLHKADFYNLNATPTDWAIEFDEYMRQALESRNDKIILDFQNKGEIAKLAAPSTEHLEPIFYVLGAMKPEEKVKFI
HHSFQNRTVSMRSFTSV

Sequences:

>Translated_257_residues
MTNPVLFLGHGSPMNLITTSDFTQNLETFGSTLSEIKNILVISAHWKTRGTYVTVADPPEQIYDFYGFPQELYEVKYRPS
GSTELAQQIQKLVKTVDVWATKDWGLDHGSWGVLYFLFRKANFPVIQLSIDANCNPEKQYEIGKELRPLREEGTLILGSG
NIVHNLHKADFYNLNATPTDWAIEFDEYMRQALESRNDKIILDFQNKGEIAKLAAPSTEHLEPIFYVLGAMKPEEKVKFI
HHSFQNRTVSMRSFTSV
>Mature_256_residues
TNPVLFLGHGSPMNLITTSDFTQNLETFGSTLSEIKNILVISAHWKTRGTYVTVADPPEQIYDFYGFPQELYEVKYRPSG
STELAQQIQKLVKTVDVWATKDWGLDHGSWGVLYFLFRKANFPVIQLSIDANCNPEKQYEIGKELRPLREEGTLILGSGN
IVHNLHKADFYNLNATPTDWAIEFDEYMRQALESRNDKIILDFQNKGEIAKLAAPSTEHLEPIFYVLGAMKPEEKVKFIH
HSFQNRTVSMRSFTSV

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=254, Percent_Identity=38.9763779527559, Blast_Score=192, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29396; Mature: 29264

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPVLFLGHGSPMNLITTSDFTQNLETFGSTLSEIKNILVISAHWKTRGTYVTVADPPE
CCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEECCCHH
QIYDFYGFPQELYEVKYRPSGSTELAQQIQKLVKTVDVWATKDWGLDHGSWGVLYFLFRK
HHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEECC
ANFPVIQLSIDANCNPEKQYEIGKELRPLREEGTLILGSGNIVHNLHKADFYNLNATPTD
CCCCEEEEEECCCCCCHHHHHHHHHHCCHHHCCCEEEECCCCEEHHHHCCEEECCCCCCC
WAIEFDEYMRQALESRNDKIILDFQNKGEIAKLAAPSTEHLEPIFYVLGAMKPEEKVKFI
EEEEHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHH
HHSFQNRTVSMRSFTSV
HHHHCCCEEEHHHHCCC
>Mature Secondary Structure 
TNPVLFLGHGSPMNLITTSDFTQNLETFGSTLSEIKNILVISAHWKTRGTYVTVADPPE
CCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEECCCHH
QIYDFYGFPQELYEVKYRPSGSTELAQQIQKLVKTVDVWATKDWGLDHGSWGVLYFLFRK
HHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEECC
ANFPVIQLSIDANCNPEKQYEIGKELRPLREEGTLILGSGNIVHNLHKADFYNLNATPTD
CCCCEEEEEECCCCCCHHHHHHHHHHCCHHHCCCEEEECCCCEEHHHHCCEEECCCCCCC
WAIEFDEYMRQALESRNDKIILDFQNKGEIAKLAAPSTEHLEPIFYVLGAMKPEEKVKFI
EEEEHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHH
HHSFQNRTVSMRSFTSV
HHHHCCCEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]