Click here to switch to the map view.

The map label for this gene is arnC [H]

Identifier: 45656350

GI number: 45656350

Start: 514668

End: 515363

Strand: Direct

Name: arnC [H]

Synonym: LIC10452

Alternate gene names: 45656350

Gene position: 514668-515363 (Clockwise)

Preceding gene: 45656349

Following gene: 45656353

Centisome position: 12.03

GC content: 38.51

Gene sequence:

>696_bases
ATGAAAGTTTCCATCGTCATTCCTTGTTATAATGAAAAAAATACGATTCGTAATATTCTGGAAACTGTGAAAAAAGTTCC
GATCAAAAATAAGGAAATCATTCTTGTAGACGATTGTTCCAAAGATGGAACGAGGGATTTACTTCAAACTCCCGCTTTTA
AAAAGCTGGCCAATCAGATTATCTTTCACGAAATCAATCAGGGAAAAGGGGCTGCATTAAGAACTGGATTTAAAGCGGCA
ACGGGGGACATTGTTATCGTTCAAGACGCTGATTTAGAATACGATCCGTTTGAAATTCCAGAAGTGATCGATCCGATTTA
CAAAGGTAAGGCGGATGTTGTTTTTGGAAGCAGGTTTTTGGGAGGTCGTCCACATAGAGTTGTCTATTACTGGCATCGTC
TAGGAAACATGGTGTTAACTACTCTTTCCAACATGTTTACGAATATCAACTTAACGGATATGGAAACTTGTTATAAGGCG
TTTCGTCGAGAAATCATTCAGTCCATTGATATTAAGGAAAATCGTTTTGGGTTTGAACCGGAAATCACGGCGAAGGTTGC
AAAAATTCCGGACGTTCGGATTTTTGAAGTAGGTATTTCTTATTACGGTAGAACTTACGCAGAAGGAAAAAAGATCGGAT
GGAAAGACGGCTTTCGTGCGATTTACTGTATTCTGCGTTATAATCTTTTGGATTGA

Upstream 100 bases:

>100_bases
AGAATTTGGTTTTCGGAATCGCTTTAGAAAAAATAATAGCACGAGCCGACGCGATCATTCGAGATTTTCGAATGGCTGAA
ATTACTGGTTTGGGGTAAGT

Downstream 100 bases:

>100_bases
AACCGTAGTGTTTTTCTTAAGATCCTAAAAACATTCGATTTGAGTTAAGTAAATTATAATATTTTGATTCTTTAAATGTC
TAATTTCAAGATGTGAAATT

Product: glycosyltransferase

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKVSIVIPCYNEKNTIRNILETVKKVPIKNKEIILVDDCSKDGTRDLLQTPAFKKLANQIIFHEINQGKGAALRTGFKAA
TGDIVIVQDADLEYDPFEIPEVIDPIYKGKADVVFGSRFLGGRPHRVVYYWHRLGNMVLTTLSNMFTNINLTDMETCYKA
FRREIIQSIDIKENRFGFEPEITAKVAKIPDVRIFEVGISYYGRTYAEGKKIGWKDGFRAIYCILRYNLLD

Sequences:

>Translated_231_residues
MKVSIVIPCYNEKNTIRNILETVKKVPIKNKEIILVDDCSKDGTRDLLQTPAFKKLANQIIFHEINQGKGAALRTGFKAA
TGDIVIVQDADLEYDPFEIPEVIDPIYKGKADVVFGSRFLGGRPHRVVYYWHRLGNMVLTTLSNMFTNINLTDMETCYKA
FRREIIQSIDIKENRFGFEPEITAKVAKIPDVRIFEVGISYYGRTYAEGKKIGWKDGFRAIYCILRYNLLD
>Mature_231_residues
MKVSIVIPCYNEKNTIRNILETVKKVPIKNKEIILVDDCSKDGTRDLLQTPAFKKLANQIIFHEINQGKGAALRTGFKAA
TGDIVIVQDADLEYDPFEIPEVIDPIYKGKADVVFGSRFLGGRPHRVVYYWHRLGNMVLTTLSNMFTNINLTDMETCYKA
FRREIIQSIDIKENRFGFEPEITAKVAKIPDVRIFEVGISYYGRTYAEGKKIGWKDGFRAIYCILRYNLLD

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=220, Percent_Identity=31.3636363636364, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI1788588, Length=214, Percent_Identity=28.0373831775701, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788692, Length=199, Percent_Identity=28.1407035175879, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787259, Length=117, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71999402, Length=224, Percent_Identity=30.8035714285714, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24585265, Length=219, Percent_Identity=27.8538812785388, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 26481; Mature: 26481

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSIVIPCYNEKNTIRNILETVKKVPIKNKEIILVDDCSKDGTRDLLQTPAFKKLANQI
CEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHCHHHHHHHHHH
IFHEINQGKGAALRTGFKAATGDIVIVQDADLEYDPFEIPEVIDPIYKGKADVVFGSRFL
HHHHCCCCCCCHHHCCCEECCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEECCHHC
GGRPHRVVYYWHRLGNMVLTTLSNMFTNINLTDMETCYKAFRREIIQSIDIKENRFGFEP
CCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
EITAKVAKIPDVRIFEVGISYYGRTYAEGKKIGWKDGFRAIYCILRYNLLD
CHHHHHHCCCCEEEEEECHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVSIVIPCYNEKNTIRNILETVKKVPIKNKEIILVDDCSKDGTRDLLQTPAFKKLANQI
CEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHCHHHHHHHHHH
IFHEINQGKGAALRTGFKAATGDIVIVQDADLEYDPFEIPEVIDPIYKGKADVVFGSRFL
HHHHCCCCCCCHHHCCCEECCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEECCHHC
GGRPHRVVYYWHRLGNMVLTTLSNMFTNINLTDMETCYKAFRREIIQSIDIKENRFGFEP
CCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
EITAKVAKIPDVRIFEVGISYYGRTYAEGKKIGWKDGFRAIYCILRYNLLD
CHHHHHHCCCCEEEEEECHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA