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The map label for this gene is 45656130

Identifier: 45656130

GI number: 45656130

Start: 258325

End: 259230

Strand: Direct

Name: 45656130

Synonym: LIC10225

Alternate gene names: NA

Gene position: 258325-259230 (Clockwise)

Preceding gene: 45656127

Following gene: 45656131

Centisome position: 6.04

GC content: 34.99

Gene sequence:

>906_bases
ATGAATTTGTCAAAAGATAAAACCTTAGATCTCGTTTCTCGATGTGGAGATGGAGAAGAAGATGCGCTGAGACAATTCTT
CGAAATCTATTCGGAAGATATCTACAATTTCCCAATGAAAATCTTTCATTTGAGCGAAGACGACGCTGGGGATTTTTTTA
TCTATGCATTTGAAAGATTAAAAACAGGCTCCCGTTTTGGAAGTTTTAAGGGAAAATCCAGTTTTAGAACTTGGTTCTAT
TCCGTTCTTAGAAATATGCTGATTGATTGGCAAAGAACCAAGCGAGAACTTAAGGTTACCAATTTAGGAAAAATTAGTAA
AGAAGGGAAGGAATACGCAACCATAGAAGACGAACCGGATACACGTCCTGAAATGCAGGAAGAAGCCAGTGAATTTTCTG
ACCGATTCAATCAGGCTCTGGAAGAAATTGGGGTTGATAAACGGGTCATTTTTAAACTTTCTTATATTTATTATTTAAAC
TTAAACGAAGATGAAGTTCAGTATCTTCTGGAAAAAACAGGATTATCTCCTGAGGCATTGAAAGAGAAAATTCTTCATCT
CAGAGCGGAACTTTCCAATCGGGAAGAAGAAAATATTCGAATGGAAGATAAAATTACCTCTTTATATCTAAATATATTAG
AATTGAAAGAAAAACAGCAAAATACTGCTAAAATAGCTCCTATTCTTCCTATGGAAGTGGATAAAACTTCTCACGCTTTG
AAAAAGAAATATGAGCAGCGTAAAAGACTTTTGGAAAAGAAAAAGAAAGGACACTTTTTAGCAAGAACCCCTTACAGAGA
AGTTGCAGAATTAATTGGGATTTCTGAGGGGAACGTAAGCGTTACTTTACTTCGTTTGATTGAAAAAATTCAGAAAAAGC
TGGATTTCAGTGATTTGGATTTTTAG

Upstream 100 bases:

>100_bases
ATTTTCCGCTTCCATGCTCAGATGGAACGCGGTCCAGATTATAATAAGTAGAAATTTTTTCATTCAGGACACAAACCTAA
GTGCAAGTAACTCATACAAA

Downstream 100 bases:

>100_bases
AAATTTCCGTCTTTTTATGCTATTGGAGAACTAAAATGGATTCGGGATCTGAAATAAACCAAGAAAACGAGCTTTTGCTT
TCGCTTTTGAGCGGGGAGGA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNLSKDKTLDLVSRCGDGEEDALRQFFEIYSEDIYNFPMKIFHLSEDDAGDFFIYAFERLKTGSRFGSFKGKSSFRTWFY
SVLRNMLIDWQRTKRELKVTNLGKISKEGKEYATIEDEPDTRPEMQEEASEFSDRFNQALEEIGVDKRVIFKLSYIYYLN
LNEDEVQYLLEKTGLSPEALKEKILHLRAELSNREEENIRMEDKITSLYLNILELKEKQQNTAKIAPILPMEVDKTSHAL
KKKYEQRKRLLEKKKKGHFLARTPYREVAELIGISEGNVSVTLLRLIEKIQKKLDFSDLDF

Sequences:

>Translated_301_residues
MNLSKDKTLDLVSRCGDGEEDALRQFFEIYSEDIYNFPMKIFHLSEDDAGDFFIYAFERLKTGSRFGSFKGKSSFRTWFY
SVLRNMLIDWQRTKRELKVTNLGKISKEGKEYATIEDEPDTRPEMQEEASEFSDRFNQALEEIGVDKRVIFKLSYIYYLN
LNEDEVQYLLEKTGLSPEALKEKILHLRAELSNREEENIRMEDKITSLYLNILELKEKQQNTAKIAPILPMEVDKTSHAL
KKKYEQRKRLLEKKKKGHFLARTPYREVAELIGISEGNVSVTLLRLIEKIQKKLDFSDLDF
>Mature_301_residues
MNLSKDKTLDLVSRCGDGEEDALRQFFEIYSEDIYNFPMKIFHLSEDDAGDFFIYAFERLKTGSRFGSFKGKSSFRTWFY
SVLRNMLIDWQRTKRELKVTNLGKISKEGKEYATIEDEPDTRPEMQEEASEFSDRFNQALEEIGVDKRVIFKLSYIYYLN
LNEDEVQYLLEKTGLSPEALKEKILHLRAELSNREEENIRMEDKITSLYLNILELKEKQQNTAKIAPILPMEVDKTSHAL
KKKYEQRKRLLEKKKKGHFLARTPYREVAELIGISEGNVSVTLLRLIEKIQKKLDFSDLDF

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35446; Mature: 35446

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSKDKTLDLVSRCGDGEEDALRQFFEIYSEDIYNFPMKIFHLSEDDAGDFFIYAFERL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEHHHHHH
KTGSRFGSFKGKSSFRTWFYSVLRNMLIDWQRTKRELKVTNLGKISKEGKEYATIEDEPD
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEECCCCCCC
TRPEMQEEASEFSDRFNQALEEIGVDKRVIFKLSYIYYLNLNEDEVQYLLEKTGLSPEAL
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEEEECCHHHHHHHHHHHCCCHHHH
KEKILHLRAELSNREEENIRMEDKITSLYLNILELKEKQQNTAKIAPILPMEVDKTSHAL
HHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHH
KKKYEQRKRLLEKKKKGHFLARTPYREVAELIGISEGNVSVTLLRLIEKIQKKLDFSDLD
HHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC
F
C
>Mature Secondary Structure
MNLSKDKTLDLVSRCGDGEEDALRQFFEIYSEDIYNFPMKIFHLSEDDAGDFFIYAFERL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEHHHHHH
KTGSRFGSFKGKSSFRTWFYSVLRNMLIDWQRTKRELKVTNLGKISKEGKEYATIEDEPD
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEECCCCCCC
TRPEMQEEASEFSDRFNQALEEIGVDKRVIFKLSYIYYLNLNEDEVQYLLEKTGLSPEAL
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEEEECCHHHHHHHHHHHCCCHHHH
KEKILHLRAELSNREEENIRMEDKITSLYLNILELKEKQQNTAKIAPILPMEVDKTSHAL
HHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHH
KKKYEQRKRLLEKKKKGHFLARTPYREVAELIGISEGNVSVTLLRLIEKIQKKLDFSDLD
HHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA