Click here to switch to the map view.

The map label for this gene is 45655967

Identifier: 45655967

GI number: 45655967

Start: 65480

End: 66382

Strand: Reverse

Name: 45655967

Synonym: LIC10053

Alternate gene names: NA

Gene position: 66382-65480 (Counterclockwise)

Preceding gene: 45655969

Following gene: 45655966

Centisome position: 1.55

GC content: 33.89

Gene sequence:

>903_bases
ATGACAGGAGCGGATATAGGCAAAAGATTCAACCAAGCTTTGAACTTAGAAAAAGAAGGCAAATATCCAGAAGCGATTTT
ACTTTATGAAGGTTTAATTCAATCCCAACCAAAATACCAAAAGTCTTATTTAAATTTAGGAGCGCTTTATTCTAAACAAG
GTAACTCCAAAAAAGCGATTGAGATCTATCAAAAAGCCCTACAGGTTGGAAAATCACCTGAACTTTACTATAACATTGGA
ATCGAACTTTATAGAAGTGGTGAAACAGAAACTGCAATTCGATCTCTTAAAAAATCTTTAGAAATTGAAAAGAAATTTTT
AAAGTCACATATTCTACTTGCGTATTGTTATAGACAACTTGAGAAGGATGATAAAACAGAACTTTATCTTACCAATGCGA
TTCGGTTAGATCCTAAAAATCGAATGGCGCTTACAGCTCTTGCAACTCTATATTTTGAAAAAGAACGTTGGAAAGAATGT
CTTGAAGCGGCCAACAAAGTAAGCAAACTTTTTCCGAACGATTCTAGAATGCAGGTGCTTCTTTCTGAAGTTCATACTCG
TCTAGGAAATTTTAAACAGTCTTTTGAAATTCTTAAACAAGCGACTTCACAATCGAAAGGATTTACTCGTTTTTTAGACA
CAATCGAAGAATTCAAAAAAAATCCAGAAGAAGCAGCTTTCTTTGATTCATTAGAAAAGCTTACAAAAAATAAATTGAAC
GAATTTCGATCAAAATTTGAAATGAGTCAGGAAAATCCAGAAGACTTCTCTCCCCCAAACCCTCAGGATGCACTTGATCT
TTCTTTGATGTATTTATTCCATGGTGACAAAGAGCGAGCTCTAAAATACATGCTCTATGCACAAAAACAATTGGAAGAAT
CAAATTCACAAAACGATGTCTGA

Upstream 100 bases:

>100_bases
CTCGGTCCTATTGATTCCTTTAAACAAATCGGTTGATCTGGAAAAAACCATTACAACTTTTTGAGTCGTCCGGGATAGAA
ATGATTCCGATAGTTATACT

Downstream 100 bases:

>100_bases
TTTTGATCTATTCAAAAACGAATTTTAGAAAAACGTTAAGTATTAGTCCCTACATTTTTGAATGATAAGATGATATTTTA
TAGTAAGACAAAGTTGTATA

Product: hypothetical protein

Products: NA

Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; Periplasmic Protein; TPR Domain Protein; TPR Domain-Containing Protein; Peptidase S1 And S6 Chymotrypsin/Hap; Tetratricopeptide Repeat-Containing Protein; Glycosyl Transferase Family Protein; TPR-Repeat-Containing Protein

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTGADIGKRFNQALNLEKEGKYPEAILLYEGLIQSQPKYQKSYLNLGALYSKQGNSKKAIEIYQKALQVGKSPELYYNIG
IELYRSGETETAIRSLKKSLEIEKKFLKSHILLAYCYRQLEKDDKTELYLTNAIRLDPKNRMALTALATLYFEKERWKEC
LEAANKVSKLFPNDSRMQVLLSEVHTRLGNFKQSFEILKQATSQSKGFTRFLDTIEEFKKNPEEAAFFDSLEKLTKNKLN
EFRSKFEMSQENPEDFSPPNPQDALDLSLMYLFHGDKERALKYMLYAQKQLEESNSQNDV

Sequences:

>Translated_300_residues
MTGADIGKRFNQALNLEKEGKYPEAILLYEGLIQSQPKYQKSYLNLGALYSKQGNSKKAIEIYQKALQVGKSPELYYNIG
IELYRSGETETAIRSLKKSLEIEKKFLKSHILLAYCYRQLEKDDKTELYLTNAIRLDPKNRMALTALATLYFEKERWKEC
LEAANKVSKLFPNDSRMQVLLSEVHTRLGNFKQSFEILKQATSQSKGFTRFLDTIEEFKKNPEEAAFFDSLEKLTKNKLN
EFRSKFEMSQENPEDFSPPNPQDALDLSLMYLFHGDKERALKYMLYAQKQLEESNSQNDV
>Mature_299_residues
TGADIGKRFNQALNLEKEGKYPEAILLYEGLIQSQPKYQKSYLNLGALYSKQGNSKKAIEIYQKALQVGKSPELYYNIGI
ELYRSGETETAIRSLKKSLEIEKKFLKSHILLAYCYRQLEKDDKTELYLTNAIRLDPKNRMALTALATLYFEKERWKECL
EAANKVSKLFPNDSRMQVLLSEVHTRLGNFKQSFEILKQATSQSKGFTRFLDTIEEFKKNPEEAAFFDSLEKLTKNKLNE
FRSKFEMSQENPEDFSPPNPQDALDLSLMYLFHGDKERALKYMLYAQKQLEESNSQNDV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI83415184, Length=228, Percent_Identity=25, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI301336134, Length=228, Percent_Identity=25, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34861; Mature: 34730

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGADIGKRFNQALNLEKEGKYPEAILLYEGLIQSQPKYQKSYLNLGALYSKQGNSKKAI
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
EIYQKALQVGKSPELYYNIGIELYRSGETETAIRSLKKSLEIEKKFLKSHILLAYCYRQL
HHHHHHHHCCCCCCEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKDDKTELYLTNAIRLDPKNRMALTALATLYFEKERWKECLEAANKVSKLFPNDSRMQVL
CCCCCCEEEEECEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LSEVHTRLGNFKQSFEILKQATSQSKGFTRFLDTIEEFKKNPEEAAFFDSLEKLTKNKLN
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EFRSKFEMSQENPEDFSPPNPQDALDLSLMYLFHGDKERALKYMLYAQKQLEESNSQNDV
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TGADIGKRFNQALNLEKEGKYPEAILLYEGLIQSQPKYQKSYLNLGALYSKQGNSKKAI
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
EIYQKALQVGKSPELYYNIGIELYRSGETETAIRSLKKSLEIEKKFLKSHILLAYCYRQL
HHHHHHHHCCCCCCEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKDDKTELYLTNAIRLDPKNRMALTALATLYFEKERWKECLEAANKVSKLFPNDSRMQVL
CCCCCCEEEEECEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LSEVHTRLGNFKQSFEILKQATSQSKGFTRFLDTIEEFKKNPEEAAFFDSLEKLTKNKLN
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EFRSKFEMSQENPEDFSPPNPQDALDLSLMYLFHGDKERALKYMLYAQKQLEESNSQNDV
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA