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The map label for this gene is ydcI [H]

Identifier: 45358690

GI number: 45358690

Start: 1116933

End: 1119074

Strand: Direct

Name: ydcI [H]

Synonym: MMP1127

Alternate gene names: 45358690

Gene position: 1116933-1119074 (Clockwise)

Preceding gene: 45358689

Following gene: 45358695

Centisome position: 67.24

GC content: 31.56

Gene sequence:

>2142_bases
ATGGATATTTTTCAACAATTGCAGAAAGAATTTAATTTAAAAACATTTCAAGTCGAAAACACTGTTAAATTAATTGATGA
AGGAAATACGATTCCATTTATTTCAAGATACAGAAAAGAAGCCACAGGTTCACTTGACGATGTTGTTTTAAGGAAATTTT
TTGATAGATTGAATTATTTAAGAAATTTAGAAGATAAAAAAGCCCAAATTATAAAATTAATTGATGAACAGGGTAAATTA
ACAGCAGAATTAAAACAAAAAATTGAAAAATCTGAACTTTTAACGGAACTTGAAGATATTTACCGTCCATTCAGGCCAAA
AAGAAAAACAAGAGCAACTATTGCAGAAAGTAAAGGATTAAAACCACTATCAGAATTAATTTTAAAACAAATTTTGGAAA
AACCAATCGAAGAACTTGCAGAAGGGTTTGTTAATCCAGAATTGGAAGTTAATTCAGTAGAAGATGCAATTTCTGGTGCT
AAAGATATTATTGCAGAAGAAATTTCGGATAATGCAGACTACAGAAAATTTATTCGTGAAAATACATTTTCAGAAGGAAT
TATTTCTGTAAAAGCAAAGAATGTGGATGAAAAATCAGTTTATGAAATGTATTATGAATATTCTGAAGCGATCAATAAAA
TTCCCGGACACAGAATCCTTGCAATAAATAGGGGAGAATCAGAAAAAATTTTACAGGTAAAACTCGATGCACCTGTTGAA
TTTATTCATGATTGGATCTTTAAAAATATAATTTTAGAAAACTCACAAACTTCTGAAATTTTAAAAGATACTGTAATTGA
CAGCTACAAAAGATTGATTGCACCATCAATTGAAAGAGAAATTAGAAATAGCCTTACAGAAAAGGCTGAAAACGGTGCAA
TTGAGGTATTTTCAAAAAATTTAAAACAGTTATTACTACAACCACCAATAAAAAACAAAACGGTACTTGGATGGGACCCG
GCATTTAGAACAGGCTGTAAAATTGCATTAGTCGATGAAACCGGAAAAGTTCTCGATAAAACAGTAGTATATCCGACAGA
ACCGCACAACAAAGTTACAGAAACTAAAAAACAGGTTAAAGAACTCATCATAAAATACGATATCGACGTTGTCGCGATTG
GAAACGGAACTGCTTCGAGAGAATCTGAACATATTGTTTCTGAAATTTTAAAAGAAGTTGTAAACGATGTTTACTACGTA
ATTGTAAATGAAGCAGGAGCTTCTGTTTATTCTGCATCTGAACTTGGATCTGATGAATTTCCAGAATATGATGTAGGAAT
TAGAAGTGCAATATCAATTGCAAGAAGACTTCAGGACCCGTTAGCAGAACTTGTAAAAATTGACCCAAAATCAATTGGTG
TAGGGCAATATCAGCACGATATGAACCAGAAAAAGTTATCTGAAAGTTTAGGTGCTGTTGTTGAATCTTCCGTAAACTCT
GTTGGCGTTGATTTAAACACTGCATCAGTTTCACTTTTAAATTACGTATCTGGAATTAATATCGGAATTGCAAAAAATAT
TGTTGCATACAGAACTGAAAATGGAAAATTCGAATCCAGAAAAGAGCTTTTAAAGGTAAGTAAACTTGGTAAAAAAGCAT
TTGAACAGTGTGCAGGGTTTTTAAGAATTCCTGAAGGTAAAAATTTATTTGACAATACTGGAGTCCACCCTGAATCATAC
AAAATTGCAGAAAATTTACTTAATGAGTTAAATATCTCGATAAAAGATATCAAAGAAAAGAAAATCGATAAAATTTCTGA
AAAAGTCGATATTGAAAAATTGGCTGAAAAATTGGATTGCGGAATCCCTACACTTGAAGATATAATTAAAGAACTTGAAA
AGCCAGGAAGAGACCCAAGAGAAGACCTTCCAAAACCAGTTTTAAGAAGCGATGTTTTAGAACTTGAAGATTTAAAAGAA
GGAATGATATTAAAAGGAACTGTTAGAAATATTGTTGATTTCGGAGCGTTTATTGATATTGGAGTTCACCACGATGGATT
AGCACATATTTCTGAAATTGCTGACCGATTTATAAAACATCCCCTTGATGTAATCTCTGTTGGAGATATCGTCGATGTTA
TGGTGATGGACATTGATTTTGATAAAAAGAGAGTTTCGCTTTCAATAAAACGTGCAAAATAA

Upstream 100 bases:

>100_bases
TCCAAATGAGCCATTTTTCATTGCGAAATTTAGAAAAACTAAAAATTAATTTTTCAAAAATCATTTTTATCTAATTAATT
ACTTTTTTAGAGGGTTTATT

Downstream 100 bases:

>100_bases
TTTAAAATGAATAATAAAATTAAATATTAATCTATTTTTTAATTGGATCGATTGTAACTTTTTCAATGATTACATCTTCA
ACAGGCCAGTTTTGATACTG

Product: RNA binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 713; Mature: 713

Protein sequence:

>713_residues
MDIFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRNLEDKKAQIIKLIDEQGKL
TAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKPLSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGA
KDIIAEEISDNADYRKFIRENTFSEGIISVKAKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVE
FIHDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAENGAIEVFSKNLKQLLLQPPIKNKTVLGWDP
AFRTGCKIALVDETGKVLDKTVVYPTEPHNKVTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVNDVYYV
IVNEAGASVYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLGAVVESSVNS
VGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESY
KIAENLLNELNISIKDIKEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKE
GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIKRAK

Sequences:

>Translated_713_residues
MDIFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRNLEDKKAQIIKLIDEQGKL
TAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKPLSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGA
KDIIAEEISDNADYRKFIRENTFSEGIISVKAKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVE
FIHDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAENGAIEVFSKNLKQLLLQPPIKNKTVLGWDP
AFRTGCKIALVDETGKVLDKTVVYPTEPHNKVTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVNDVYYV
IVNEAGASVYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLGAVVESSVNS
VGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESY
KIAENLLNELNISIKDIKEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKE
GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIKRAK
>Mature_713_residues
MDIFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRNLEDKKAQIIKLIDEQGKL
TAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKPLSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGA
KDIIAEEISDNADYRKFIRENTFSEGIISVKAKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVE
FIHDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAENGAIEVFSKNLKQLLLQPPIKNKTVLGWDP
AFRTGCKIALVDETGKVLDKTVVYPTEPHNKVTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVNDVYYV
IVNEAGASVYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLGAVVESSVNS
VGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESY
KIAENLLNELNISIKDIKEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKE
GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIKRAK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=788, Percent_Identity=35.7868020304569, Blast_Score=430, Evalue=1e-120,
Organism=Homo sapiens, GI27597090, Length=514, Percent_Identity=21.4007782101167, Blast_Score=89, Evalue=1e-17,
Organism=Escherichia coli, GI87082262, Length=720, Percent_Identity=44.3055555555556, Blast_Score=592, Evalue=1e-170,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=46.7532467532467, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17511129, Length=756, Percent_Identity=33.4656084656085, Blast_Score=298, Evalue=5e-81,
Organism=Caenorhabditis elegans, GI17552892, Length=617, Percent_Identity=21.7179902755267, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI62484314, Length=741, Percent_Identity=34.1430499325236, Blast_Score=392, Evalue=1e-109,
Organism=Drosophila melanogaster, GI24640080, Length=506, Percent_Identity=22.3320158102767, Blast_Score=102, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80488; Mature: 80488

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYL
CCHHHHHHHHHCCEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RNLEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGL
HCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
KPLSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRE
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
NTFSEGIISVKAKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVE
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCHH
FIHDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAENGAIEVFSKN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHH
LKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNKVTETKKQVK
HHHHHHCCCCCCCEEECCCHHHHCCCEEEEECCCCHHHHCEEECCCCCCHHHHHHHHHHH
ELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVNDVYYVIVNEAGASVYSASELGSDEF
HHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHCCCCCC
PEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLGAVVESSVNS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKKAFEQCAGF
CCCCCCHHHHHHHHHHHCCCCHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKISEKVDIEKLAEKLDC
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHCC
GIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDI
CCCHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHEEE
GVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIKRAK
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCEEEEEEECCC
>Mature Secondary Structure
MDIFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYL
CCHHHHHHHHHCCEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RNLEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGL
HCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
KPLSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRE
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
NTFSEGIISVKAKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVE
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCHH
FIHDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAENGAIEVFSKN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHH
LKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNKVTETKKQVK
HHHHHHCCCCCCCEEECCCHHHHCCCEEEEECCCCHHHHCEEECCCCCCHHHHHHHHHHH
ELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVNDVYYVIVNEAGASVYSASELGSDEF
HHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHCCCCCC
PEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLGAVVESSVNS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKKAFEQCAGF
CCCCCCHHHHHHHHHHHCCCCHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKISEKVDIEKLAEKLDC
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHCC
GIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDI
CCCHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHEEE
GVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIKRAK
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]