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The map label for this gene is yebU [C]

Identifier: 45358689

GI number: 45358689

Start: 1116003

End: 1116881

Strand: Direct

Name: yebU [C]

Synonym: MMP1126

Alternate gene names: 45358689

Gene position: 1116003-1116881 (Clockwise)

Preceding gene: 45358688

Following gene: 45358690

Centisome position: 67.18

GC content: 32.2

Gene sequence:

>879_bases
ATGGTCGAAAATCAAAAAAAGATTATAAACACGGTTGCTGATATTACTATATTAATATATTATTATACTGCGGTGGTATT
TTTGGAAAATTTACAGTTTATACGGGTAAACACGTTAAAAATATCTTCTGAAGAACTTAAAACTCGATTGGAAGAAAAAG
GAGTGAATTTAGAAGATACATTTTTAGATTATGTATTTAGAGTTGTAAAATCGCCATTTTCTATGGGCTCAACTCCAGAA
TATCTTTTGGGATACTACTTTTTGCAGAGTATCTCATCAATAATTCCATCAATAACACTCAATCCATCAAAAGATGACGA
AGTACTCGACATGTGTGCGGCACCCGGTGGAAAAACTACCCACCTTGCACAGTTAATGGAAAATGAAGGATCAATTCTTG
CTGTTGAAATAAACAAAAACAGACTGAAAAGTTTAAGGTCAAATATCAACAGAATGGGATTTAAAAATACGTTAATGATA
AACACGAATGCAGTTAACATTGATAAAAAATTAAGATTCGATAAAATCCTTTTGGATGCCCCATGTACTGGAAACGAGGT
AAAAGACAGTAACCGGGTAAAAACAAAACGAGATATCTTATTCTGTGCAAAAAGACAGGTTGAATTATTTAGAACTGCAA
TCGAAGTATTAAAAGACGGCGGTGAACTAGTATACAGTACATGTTCCCCCGAAATTGAAGAAGACGAAGATATTGTTCGA
TATATTTTAAAGACCAATAAAAATATGGAACTTATTGAATTAACTGTGGATGATTTCCCAGGAATAAACATGATTGAAGG
CGAAGTTAAAGGAACTTTAAAGGTAATTCCTCCAAATGAGCCATTTTTCATTGCGAAATTTAGAAAAACTAAAAATTAA

Upstream 100 bases:

>100_bases
TTATAGGAATCCTCGCAAATACGTTTGGAAATGGCGAATACATTCACAACACCGTCGGTTTTGTGTTTTTTCCCACAATT
ACAGTTTTTACGATTTTGCT

Downstream 100 bases:

>100_bases
TTTTTCAAAAATCATTTTTATCTAATTAATTACTTTTTTAGAGGGTTTATTATGGATATTTTTCAACAATTGCAGAAAGA
ATTTAATTTAAAAACATTTC

Product: putative proliferating-cell nucleolar antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MVENQKKIINTVADITILIYYYTAVVFLENLQFIRVNTLKISSEELKTRLEEKGVNLEDTFLDYVFRVVKSPFSMGSTPE
YLLGYYFLQSISSIIPSITLNPSKDDEVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMI
NTNAVNIDKKLRFDKILLDAPCTGNEVKDSNRVKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSPEIEEDEDIVR
YILKTNKNMELIELTVDDFPGINMIEGEVKGTLKVIPPNEPFFIAKFRKTKN

Sequences:

>Translated_292_residues
MVENQKKIINTVADITILIYYYTAVVFLENLQFIRVNTLKISSEELKTRLEEKGVNLEDTFLDYVFRVVKSPFSMGSTPE
YLLGYYFLQSISSIIPSITLNPSKDDEVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMI
NTNAVNIDKKLRFDKILLDAPCTGNEVKDSNRVKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSPEIEEDEDIVR
YILKTNKNMELIELTVDDFPGINMIEGEVKGTLKVIPPNEPFFIAKFRKTKN
>Mature_292_residues
MVENQKKIINTVADITILIYYYTAVVFLENLQFIRVNTLKISSEELKTRLEEKGVNLEDTFLDYVFRVVKSPFSMGSTPE
YLLGYYFLQSISSIIPSITLNPSKDDEVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMI
NTNAVNIDKKLRFDKILLDAPCTGNEVKDSNRVKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSPEIEEDEDIVR
YILKTNKNMELIELTVDDFPGINMIEGEVKGTLKVIPPNEPFFIAKFRKTKN

Specific function: May act as RNA methyltransferase [H]

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=280, Percent_Identity=40.3571428571429, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI76150623, Length=280, Percent_Identity=40.3571428571429, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI32698918, Length=182, Percent_Identity=33.5164835164835, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI270288818, Length=289, Percent_Identity=26.2975778546713, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI23199998, Length=289, Percent_Identity=26.2975778546713, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI8922322, Length=289, Percent_Identity=26.2975778546713, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI270288816, Length=289, Percent_Identity=26.2975778546713, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI11545785, Length=231, Percent_Identity=31.1688311688312, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI39995082, Length=201, Percent_Identity=29.3532338308458, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI301336155, Length=201, Percent_Identity=29.3532338308458, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI87081985, Length=279, Percent_Identity=36.5591397849462, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI2367212, Length=264, Percent_Identity=30.6818181818182, Blast_Score=116, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17536757, Length=234, Percent_Identity=39.7435897435897, Blast_Score=157, Evalue=6e-39,
Organism=Caenorhabditis elegans, GI115534021, Length=231, Percent_Identity=28.1385281385281, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI25143471, Length=186, Percent_Identity=31.1827956989247, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71998419, Length=231, Percent_Identity=28.1385281385281, Blast_Score=81, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6324268, Length=280, Percent_Identity=36.7857142857143, Blast_Score=174, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6319447, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI22024126, Length=259, Percent_Identity=37.4517374517375, Blast_Score=152, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24668781, Length=229, Percent_Identity=31.8777292576419, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI21356513, Length=229, Percent_Identity=31.8777292576419, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI19920494, Length=173, Percent_Identity=29.4797687861272, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21355201, Length=189, Percent_Identity=32.2751322751323, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21356579, Length=180, Percent_Identity=28.3333333333333, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR011023 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu [H]

EC number: NA

Molecular weight: Translated: 33269; Mature: 33269

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVENQKKIINTVADITILIYYYTAVVFLENLQFIRVNTLKISSEELKTRLEEKGVNLEDT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHCCCCHHHH
FLDYVFRVVKSPFSMGSTPEYLLGYYFLQSISSIIPSITLNPSKDDEVLDMCAAPGGKTT
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCCCCCHH
HLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTNAVNIDKKLRFDKILLDA
HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCEECCHHHHHHHHEEEEC
PCTGNEVKDSNRVKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSPEIEEDEDIVR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
YILKTNKNMELIELTVDDFPGINMIEGEVKGTLKVIPPNEPFFIAKFRKTKN
HHHHCCCCCEEEEEEECCCCCCCEEECCCCCEEEEECCCCCEEEEEECCCCC
>Mature Secondary Structure
MVENQKKIINTVADITILIYYYTAVVFLENLQFIRVNTLKISSEELKTRLEEKGVNLEDT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHCCCCHHHH
FLDYVFRVVKSPFSMGSTPEYLLGYYFLQSISSIIPSITLNPSKDDEVLDMCAAPGGKTT
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCCCCCHH
HLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTNAVNIDKKLRFDKILLDA
HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCEECCHHHHHHHHEEEEC
PCTGNEVKDSNRVKTKRDILFCAKRQVELFRTAIEVLKDGGELVYSTCSPEIEEDEDIVR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
YILKTNKNMELIELTVDDFPGINMIEGEVKGTLKVIPPNEPFFIAKFRKTKN
HHHHCCCCCEEEEEEECCCCCCCEEECCCCCEEEEECCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]